Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -12,21 +12,20 @@ 12 12 13 13 === openMINDS core === 14 14 15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes: 15 +(% style="text-align: justify;" %) 16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 16 16 17 17 {{container layoutStyle="columns"}} 18 18 ((( 19 19 (% class="small" %) 20 -ACTORS 21 +**ACTORS** 21 21 Affiliation 22 22 ContactInformation 23 23 Contribution 24 24 Organization 25 25 Person 26 -))) 27 -((( 28 28 (% class="small" %) 29 -DATA 28 +**DATA** 30 30 ContentType 31 31 Copyright 32 32 FileBundle ... ... @@ -37,16 +37,14 @@ 37 37 ))) 38 38 ((( 39 39 (% class="small" %) 40 -MISCELLANEOUS 39 +**MISCELLANEOUS** 41 41 DigitalIdentifier 42 42 DigitalIdentifierSchema 43 43 Funding 44 44 QuantitativeValue 45 45 QuantitativeValueRange 46 -))) 47 -((( 48 48 (% class="small" %) 49 -PRODUCTS 46 +**PRODUCTS** 50 50 Dataset 51 51 DatasetVersion 52 52 MetaDataModel ... ... @@ -59,7 +59,7 @@ 59 59 ))) 60 60 ((( 61 61 (% class="small" %) 62 -RESEARCH 59 +**RESEARCH** 63 63 ParameterSetting 64 64 Protocol 65 65 ProtocolExecution ... ... @@ -74,14 +74,114 @@ 74 74 ))) 75 75 {{/container}} 76 76 74 +(% class="wikigeneratedid" style="text-align: justify;" %) 75 +In case of EBRAINS, metadata representations (instances) of the schemas ContentType, License, and DigitalIdentifierSchema are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances). 76 + 77 +(% class="wikigeneratedid" style="text-align: justify;" %) 78 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 79 + 80 +(% class="wikigeneratedid" %) 81 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel=" noopener noreferrer" target="_blank"]] 82 + 77 77 === openMINDS SANDS === 78 78 79 -xxx 85 +(% style="text-align: justify;" %) 86 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 80 80 81 -=== openMINDS controlledTerms === 88 +{{container layoutStyle="columns"}} 89 +((( 90 +(% class="small" %) 91 +AnatomicalEntity 92 +AnatomicalEntityRelation 93 +Annotation 94 +AtlasTerminology 95 +))) 96 +((( 97 +(% class="small" %) 98 +BrainAtlas 99 +BrainAtlasVersion 100 +CoordinatePoint 101 +CoordinateSpace 102 +))) 103 +((( 104 +(% class="small" %) 105 +Electrode 106 +ElectrodeArray 107 +ElectrodeContact 108 +Image 109 +))) 110 +{{/container}} 82 82 83 -xxx 112 +(% class="wikigeneratedid" style="text-align: justify;" %) 113 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 84 84 115 +(% class="wikigeneratedid" %) 116 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]] 117 + 118 +=== openMINDS controlledTerms - schemas === 119 + 120 +(% style="text-align: justify;" %) 121 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 122 + 123 +{{container layoutStyle="columns"}} 124 +((( 125 +(% class="small" %) 126 +AgeCategory 127 +AnatomicalAxesOrientation 128 +BehavioralTask 129 +BiologicalSex 130 +CellType 131 +ContributionType 132 +CriteriaQualityType 133 +DatasetType 134 +Disease 135 +DiseaseModel 136 +EthicsAssessment 137 +FileBundleGrouping 138 +FileUsageRole 139 +))) 140 +((( 141 +(% class="small" %) 142 +Genotype 143 +Language 144 +Laterality 145 +MetaDataModelType 146 +Modality 147 +ModelAbstractionLevel 148 +ModelScope 149 +OperatingDevice 150 +OperatingSystem 151 +Organ 152 +Phenotype 153 +PreparationType 154 +ProductAccessibility 155 +))) 156 +((( 157 +(% class="small" %) 158 +ProgrammingLanguage 159 +QualitativeOverlap 160 +SoftwareApplicationCategory 161 +SoftwareFeature 162 +Species 163 +Strain 164 +Technique 165 +TermSuggestion 166 +Terminology 167 +TissueSampleType 168 +TypeOfUncertainty 169 +UnitOfMeasurement 170 +))) 171 +{{/container}} 172 + 173 +(% style="text-align: justify;" %) 174 +Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. 175 + 176 +(% class="wikigeneratedid" style="text-align: justify;" %) 177 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 178 + 179 +(% class="wikigeneratedid" %) 180 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]] 181 + 85 85 === openMINDS instances === 86 86 87 87 xxx