Last modified by lzehl on 2021/07/02 17:06
From version 7.1
edited by lzehl
on 2021/02/18 17:56
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To version 49.1
edited by lzehl
on 2021/03/17 16:14
Change comment: There is no comment for this version

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4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
7 +A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and to available metadata instances for selected schemas.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
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12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that you can use to describe the general origin, resource location, and content of your research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 -{{container layoutStyle="columns"}}
18 -(((
19 -(% class="small" %)
20 -ACTORS
21 -Affiliation
22 -ContactInformation
23 -Contribution
24 -Organization
25 -Person
26 -)))
27 -(((
28 -(% class="small" %)
29 -DATA
30 -ContentType
31 -Copyright
32 -FileBundle
33 -FileInstance
34 -FileRepository
35 -Hash
36 -License
37 -)))
38 -(((
39 -(% class="small" %)
40 -MISCELLANEOUS
41 -DigitalIdentifier
42 -DigitalIdentifierSchema
43 -Funding
44 -QuantitativeValue
45 -QuantitativeValueRange
46 -)))
47 -(((
48 -(% class="small" %)
49 -PRODUCTS
50 -Dataset
51 -DatasetVersion
52 -MetaDataModel
53 -MetaDataModelVersion
54 -Model
55 -ModelVersion
56 -Project
57 -Software
58 -SoftwareVersion
59 -)))
60 -(((
61 -(% class="small" %)
62 -RESEARCH
63 -ParameterSetting
64 -Protocol
65 -ProtocolExecution
66 -Subject
67 -SubjectGroup
68 -SubjectGroupState
69 -SubjectState
70 -TissueSample
71 -TissueSampleCollection
72 -TissueSampleCollectionState
73 -TissueSampleState
74 -)))
75 -{{/container}}
18 +(% style="text-align: right;" %)
19 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 +{{html}}<iframe id="coreFrame" src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>{{/html}}
76 76  
22 +(% class="wikigeneratedid" style="text-align: justify;" %)
23 +In case of EBRAINS, metadata representations (instances) of a few selected schemas (**##ContentType##**, **##DititalIdentifierSchema##**, **##License##**) are centrally defined and maintained in a library on a separate [[openMINDS instances GitHub>>https://github.com/HumanBrainProject/openMINDS_instances/||rel="noopener noreferrer" target="_blank"]] to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
24 +
25 +(% class="wikigeneratedid" style="text-align: justify;" %)
26 +For details on, contributing to, or reviewing examples of the openMINDS core metadata model please checkout the dedicated GitHub repository:
27 +
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29 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
30 +
77 77  === openMINDS SANDS ===
78 78  
79 -xxx
33 +(% style="text-align: justify;" %)
34 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that you can use to capture the anatomical location of your neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
80 80  
36 +(% style="text-align: right;" %)
37 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
38 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
39 +
40 +(% class="wikigeneratedid" style="text-align: justify;" %)
41 +For details on, contributing to, or reviewing examples of the openMINDS SANDS metadata model please checkout the dedicated GitHub repository:
42 +
43 +(% class="wikigeneratedid" %)
44 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
45 +
81 81  === openMINDS controlledTerms ===
82 82  
83 -xxx
48 +(% style="text-align: justify;" %)
49 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
84 84  
85 -=== openMINDS instances ===
51 +(% style="text-align: right;" %)
52 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
53 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/controlledTerms.html" width="100%" style="border:0; height: 25em"/>{{/html}}
86 86  
87 -xxx
55 +(% class="wikigeneratedid" style="text-align: justify;" %)
56 +Except for **##TermSuggestion##**, the openMINDS controlledTerms metadata schemas differ only in their schema type which defines the terminology to which correspondingly created metadata representations (instances) belong to. In order to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph, instances for all controlled terms are centrally defined and maintained in a library on the openMINDS controlledTerms GitHub under [[**##terminologies/##**>>https://github.com/HumanBrainProject/openMINDS_controlledTerms/tree/v1/terminologies]]. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
57 +
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59 +We expect the list of controlled terms (schema as well as instances) to grow based on your feedback. You can provide this feedback directly through the schema **##TermSuggestion##**. If an important term is missing from our controlled library, this schema provides you with the possibility to define your own term and register it as a suggestion for the controlled library. For this purpose, the **##TermSuggestion##** schema has two more properties (**##"addExistingTerminology"##**, **##"suggestNewTerminology"##**) where you can state to which terminology the new suggested (not yet controlled) term should belong to. Within the EBRAINS Knowledge Graph, the metadata representations for **##TermSuggestion##** will be regularly reviewed by the openMINDS development team in order to integrate these community-driven suggestions into the controlledTerms terminologies and corresponding ontologies (where applicable).
60 +
61 +(% class="wikigeneratedid" style="text-align: justify;" %)
62 +For details on, contributing to, or reviewing examples of the openMINDS controlledTerms metadata model please checkout the dedicated GitHub repository:
63 +
64 +(% class="wikigeneratedid" %)
65 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
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openMINDS