Last modified by lzehl on 2021/07/02 17:06
From version 8.1
edited by lzehl
on 2021/02/18 18:03
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To version 16.1
edited by lzehl
on 2021/02/22 16:27
Change comment: There is no comment for this version

Summary

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Content
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12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 17  {{container layoutStyle="columns"}}
18 18  (((
... ... @@ -25,19 +25,19 @@
25 25  Person
26 26  (% class="small" %)
27 27  **DATA**
28 -ContentType
29 +ContentType*
29 29  Copyright
30 30  FileBundle
31 31  FileInstance
32 32  FileRepository
33 33  Hash
34 -License
35 +License*
35 35  )))
36 36  (((
37 37  (% class="small" %)
38 38  **MISCELLANEOUS**
39 39  DigitalIdentifier
40 -DigitalIdentifierSchema
41 +DigitalIdentifierSchema*
41 41  Funding
42 42  QuantitativeValue
43 43  QuantitativeValueRange
... ... @@ -70,14 +70,114 @@
70 70  )))
71 71  {{/container}}
72 72  
74 +(% class="wikigeneratedid" style="text-align: justify;" %)
75 +In case of EBRAINS, metadata representations (instances) of the schemas marked with an asterisk are centrally defined and maintained on a separate GitHub to guarantee more consistency across the database instances of the Knowledge Graph (cf. section openMINDS instances).
76 +
77 +(% class="wikigeneratedid" style="text-align: justify;" %)
78 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
79 +
80 +(% class="wikigeneratedid" %)
81 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core||rel="noopener noreferrer" target="_blank"]]
82 +
73 73  === openMINDS SANDS ===
74 74  
75 -xxx
85 +(% style="text-align: justify;" %)
86 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
76 76  
77 -=== openMINDS controlledTerms ===
88 +{{container layoutStyle="columns"}}
89 +(((
90 +(% class="small" %)
91 +AnatomicalEntity
92 +AnatomicalEntityRelation
93 +Annotation
94 +AtlasTerminology
95 +)))
96 +(((
97 +(% class="small" %)
98 +BrainAtlas
99 +BrainAtlasVersion
100 +CoordinatePoint
101 +CoordinateSpace
102 +)))
103 +(((
104 +(% class="small" %)
105 +Electrode
106 +ElectrodeArray
107 +ElectrodeContact
108 +Image
109 +)))
110 +{{/container}}
78 78  
79 -xxx
112 +(% class="wikigeneratedid" style="text-align: justify;" %)
113 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
80 80  
115 +(% class="wikigeneratedid" %)
116 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
117 +
118 +=== openMINDS controlledTerms - schemas ===
119 +
120 +(% style="text-align: justify;" %)
121 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
122 +
123 +{{container layoutStyle="columns"}}
124 +(((
125 +(% class="small" %)
126 +AgeCategory
127 +AnatomicalAxesOrientation
128 +BehavioralTask
129 +BiologicalSex
130 +CellType
131 +ContributionType
132 +CriteriaQualityType
133 +DatasetType
134 +Disease
135 +DiseaseModel
136 +EthicsAssessment
137 +FileBundleGrouping
138 +FileUsageRole
139 +)))
140 +(((
141 +(% class="small" %)
142 +Genotype
143 +Language
144 +Laterality
145 +MetaDataModelType
146 +Modality
147 +ModelAbstractionLevel
148 +ModelScope
149 +OperatingDevice
150 +OperatingSystem
151 +Organ
152 +Phenotype
153 +PreparationType
154 +ProductAccessibility
155 +)))
156 +(((
157 +(% class="small" %)
158 +ProgrammingLanguage
159 +QualitativeOverlap
160 +SoftwareApplicationCategory
161 +SoftwareFeature
162 +Species
163 +Strain
164 +Technique
165 +TermSuggestion*
166 +Terminology
167 +TissueSampleType
168 +TypeOfUncertainty
169 +UnitOfMeasurement
170 +)))
171 +{{/container}}
172 +
173 +(% style="text-align: justify;" %)
174 +Except for TermSuggestion (marked with an asterisk), the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
175 +
176 +(% class="wikigeneratedid" style="text-align: justify;" %)
177 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
178 +
179 +(% class="wikigeneratedid" %)
180 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
181 +
81 81  === openMINDS instances ===
82 82  
83 83  xxx
Public

openMINDS