Changes for page Metadata models and schemas
Last modified by lzehl on 2021/07/02 17:06
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... ... @@ -12,7 +12,8 @@ 12 12 13 13 === openMINDS core === 14 14 15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes: 15 +(% style="text-align: justify;" %) 16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes: 16 16 17 17 {{container layoutStyle="columns"}} 18 18 ((( ... ... @@ -70,14 +70,111 @@ 70 70 ))) 71 71 {{/container}} 72 72 74 +(% class="wikigeneratedid" style="text-align: justify;" %) 75 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 76 + 77 +(% class="wikigeneratedid" %) 78 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core]] 79 + 73 73 === openMINDS SANDS === 74 74 75 -The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. 82 +(% style="text-align: justify;" %) 83 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas: 76 76 77 -=== openMINDS controlledTerms === 85 +{{container layoutStyle="columns"}} 86 +((( 87 +(% class="small" %) 88 +AnatomicalEntity 89 +AnatomicalEntityRelation 90 +Annotation 91 +AtlasTerminology 92 +))) 93 +((( 94 +(% class="small" %) 95 +BrainAtlas 96 +BrainAtlasVersion 97 +CoordinatePoint 98 +CoordinateSpace 99 +))) 100 +((( 101 +(% class="small" %) 102 +Electrode 103 +ElectrodeArray 104 +ElectrodeContact 105 +Image 106 +))) 107 +{{/container}} 78 78 79 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms and including linkages to existing ontological terms where applicable. 109 +(% class="wikigeneratedid" style="text-align: justify;" %) 110 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 80 80 112 +(% class="wikigeneratedid" %) 113 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]] 114 + 115 +=== openMINDS controlledTerms - schemas === 116 + 117 +(% style="text-align: justify;" %) 118 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas: 119 + 120 +{{container layoutStyle="columns"}} 121 +((( 122 +(% class="small" %) 123 +AgeCategory 124 +AnatomicalAxesOrientation 125 +BehavioralTask 126 +BiologicalSex 127 +CellType 128 +ContributionType 129 +CriteriaQualityType 130 +DatasetType 131 +Disease 132 +DiseaseModel 133 +EthicsAssessment 134 +FileBundleGrouping 135 +FileUsageRole 136 +))) 137 +((( 138 +(% class="small" %) 139 +Genotype 140 +Language 141 +Laterality 142 +MetaDataModelType 143 +Modality 144 +ModelAbstractionLevel 145 +ModelScope 146 +OperatingDevice 147 +OperatingSystem 148 +Organ 149 +Phenotype 150 +PreparationType 151 +ProductAccessibility 152 +))) 153 +((( 154 +(% class="small" %) 155 +ProgrammingLanguage 156 +QualitativeOverlap 157 +SoftwareApplicationCategory 158 +SoftwareFeature 159 +Species 160 +Strain 161 +Technique 162 +TermSuggestion 163 +Terminology 164 +TissueSampleType 165 +TypeOfUncertainty 166 +UnitOfMeasurement 167 +))) 168 +{{/container}} 169 + 170 +(% style="text-align: justify;" %) 171 +Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to. 172 + 173 +(% class="wikigeneratedid" style="text-align: justify;" %) 174 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository: 175 + 176 +(% class="wikigeneratedid" %) 177 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]] 178 + 81 81 === openMINDS instances === 82 82 83 83 xxx