Last modified by lzehl on 2021/07/02 17:06

From version 9.1
edited by lzehl
on 2021/02/22 11:19
Change comment: There is no comment for this version
To version 14.1
edited by lzehl
on 2021/02/22 16:12
Change comment: There is no comment for this version

Summary

Details

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Content
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12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 17  {{container layoutStyle="columns"}}
18 18  (((
... ... @@ -70,14 +70,111 @@
70 70  )))
71 71  {{/container}}
72 72  
74 +(% class="wikigeneratedid" style="text-align: justify;" %)
75 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
76 +
77 +(% class="wikigeneratedid" %)
78 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core]]
79 +
73 73  === openMINDS SANDS ===
74 74  
75 -The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces.
82 +(% style="text-align: justify;" %)
83 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
76 76  
77 -=== openMINDS controlledTerms ===
85 +{{container layoutStyle="columns"}}
86 +(((
87 +(% class="small" %)
88 +AnatomicalEntity
89 +AnatomicalEntityRelation
90 +Annotation
91 +AtlasTerminology
92 +)))
93 +(((
94 +(% class="small" %)
95 +BrainAtlas
96 +BrainAtlasVersion
97 +CoordinatePoint
98 +CoordinateSpace
99 +)))
100 +(((
101 +(% class="small" %)
102 +Electrode
103 +ElectrodeArray
104 +ElectrodeContact
105 +Image
106 +)))
107 +{{/container}}
78 78  
79 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms and including linkages to existing ontological terms where applicable.
109 +(% class="wikigeneratedid" style="text-align: justify;" %)
110 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
80 80  
112 +(% class="wikigeneratedid" %)
113 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
114 +
115 +=== openMINDS controlledTerms - schemas ===
116 +
117 +(% style="text-align: justify;" %)
118 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
119 +
120 +{{container layoutStyle="columns"}}
121 +(((
122 +(% class="small" %)
123 +AgeCategory
124 +AnatomicalAxesOrientation
125 +BehavioralTask
126 +BiologicalSex
127 +CellType
128 +ContributionType
129 +CriteriaQualityType
130 +DatasetType
131 +Disease
132 +DiseaseModel
133 +EthicsAssessment
134 +FileBundleGrouping
135 +FileUsageRole
136 +)))
137 +(((
138 +(% class="small" %)
139 +Genotype
140 +Language
141 +Laterality
142 +MetaDataModelType
143 +Modality
144 +ModelAbstractionLevel
145 +ModelScope
146 +OperatingDevice
147 +OperatingSystem
148 +Organ
149 +Phenotype
150 +PreparationType
151 +ProductAccessibility
152 +)))
153 +(((
154 +(% class="small" %)
155 +ProgrammingLanguage
156 +QualitativeOverlap
157 +SoftwareApplicationCategory
158 +SoftwareFeature
159 +Species
160 +Strain
161 +Technique
162 +TermSuggestion
163 +Terminology
164 +TissueSampleType
165 +TypeOfUncertainty
166 +UnitOfMeasurement
167 +)))
168 +{{/container}}
169 +
170 +(% style="text-align: justify;" %)
171 +Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
172 +
173 +(% class="wikigeneratedid" style="text-align: justify;" %)
174 +For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
175 +
176 +(% class="wikigeneratedid" %)
177 +[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
178 +
81 81  === openMINDS instances ===
82 82  
83 83  xxx
Public

openMINDS