Last modified by lzehl on 2021/07/02 17:06
From version 9.1
edited by lzehl
on 2021/02/22 11:19
Change comment: There is no comment for this version
To version 51.1
edited by lzehl
on 2021/04/08 10:43
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -4,7 +4,7 @@
4 4  The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
5 5  
6 6  (% style="text-align: justify;" %)
7 -Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
7 +A short overview for each openMINDS metadata model can be found below, including links to full HTML descriptions for all schemas and to available metadata instances for selected schemas.
8 8  
9 9  (% style="text-align: justify;" %)
10 10  Note that all metadata models are licensed under the MIT license.
... ... @@ -12,72 +12,45 @@
12 12  
13 13  === openMINDS core ===
14 14  
15 -The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently this metadata model comprises 37 usable schemas, grouped into five classes:
15 +(% style="text-align: justify;" %)
16 +The openMINDS core metadata model contains schemas that you can use to describe the general origin, resource location, and content of your research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
16 16  
17 -{{container layoutStyle="columns"}}
18 -(((
19 -(% class="small" %)
20 -**ACTORS**
21 -Affiliation
22 -ContactInformation
23 -Contribution
24 -Organization
25 -Person
26 -(% class="small" %)
27 -**DATA**
28 -ContentType
29 -Copyright
30 -FileBundle
31 -FileInstance
32 -FileRepository
33 -Hash
34 -License
35 -)))
36 -(((
37 -(% class="small" %)
38 -**MISCELLANEOUS**
39 -DigitalIdentifier
40 -DigitalIdentifierSchema
41 -Funding
42 -QuantitativeValue
43 -QuantitativeValueRange
44 -(% class="small" %)
45 -**PRODUCTS**
46 -Dataset
47 -DatasetVersion
48 -MetaDataModel
49 -MetaDataModelVersion
50 -Model
51 -ModelVersion
52 -Project
53 -Software
54 -SoftwareVersion
55 -)))
56 -(((
57 -(% class="small" %)
58 -**RESEARCH**
59 -ParameterSetting
60 -Protocol
61 -ProtocolExecution
62 -Subject
63 -SubjectGroup
64 -SubjectGroupState
65 -SubjectState
66 -TissueSample
67 -TissueSampleCollection
68 -TissueSampleCollectionState
69 -TissueSampleState
70 -)))
71 -{{/container}}
18 +(% style="text-align: right;" %)
19 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
20 +{{html}}<iframe id="coreFrame" src="https://humanbrainproject.github.io/openMINDS/core.html" width="100%" style="border:0; height: 28em"/>{{/html}}
72 72  
22 +(% class="wikigeneratedid" style="text-align: justify;" %)
23 +In case of EBRAINS, metadata representations (instances) of a few selected schemas (**##ContentType##**, **##DititalIdentifierSchema##**, **##License##**) are centrally defined and maintained in a library on a separate [[openMINDS instances GitHub>>https://github.com/HumanBrainProject/openMINDS_instances/||rel="noopener noreferrer" target="_blank"]] to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
24 +
25 +(% class="wikigeneratedid" style="text-align: justify;" %)
26 +For further details on this metadata model, please check out the [[openMINDS core GitHub repository>>https://github.com/HumanBrainProject/openMINDS_core]].
27 +
73 73  === openMINDS SANDS ===
74 74  
75 -The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces.
30 +(% style="text-align: justify;" %)
31 +The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that you can use to capture the anatomical location of your neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
76 76  
33 +(% style="text-align: right;" %)
34 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
35 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/SANDS.html" width="100%" style="border:0; height: 8em"/>{{/html}}
36 +
37 +(% class="wikigeneratedid" style="text-align: justify;" %)
38 +For further details on this metadata model, please check out the [[openMINDS SANDS GitHub repository>>https://github.com/HumanBrainProject/openMINDS_SANDS]].
39 +
77 77  === openMINDS controlledTerms ===
78 78  
79 -The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms and including linkages to existing ontological terms where applicable.
42 +(% style="text-align: justify;" %)
43 +The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
80 80  
81 -=== openMINDS instances ===
45 +(% style="text-align: right;" %)
46 +(% class="small" style="color:#7f8c8d" %)Click on a schema to discover its full HTML description.
47 +{{html}}<iframe src="https://humanbrainproject.github.io/openMINDS/controlledTerms.html" width="100%" style="border:0; height: 25em"/>{{/html}}
82 82  
83 -xxx
49 +(% class="wikigeneratedid" style="text-align: justify;" %)
50 +Except for **##TermSuggestion##**, the openMINDS controlledTerms metadata schemas differ only in their schema type which defines the terminology to which correspondingly created metadata representations (instances) belong to. In order to guarantee more consistency across the database instances of the EBRAINS Knowledge Graph, instances for all controlled terms (except **##TermSuggestion##**) are centrally defined and maintained in a library on a separate [[openMINDS instances GitHub>>https://github.com/HumanBrainProject/openMINDS_instances/||rel="noopener noreferrer" target="_blank"]]. Feel free to explore these instances and to use them also outside of the EBRAINS Knowledge Graph.
51 +
52 +(% style="text-align: justify;" %)
53 +We expect the list of controlled terms (schema as well as instances) to grow based on your feedback. For instances within the EBRAINS Knowledge Graph that are entries for the property "study target", you can provide this feedback directly through the schema **##TermSuggestion##**. For all other instances (e.g., of type Technique or BehavioralTask) or if you work independent of the EBRAINS Knowledge Graph, please provide your feedback through the [[openMINDS instances GitHub Issue Tracker>>https://github.com/HumanBrainProject/openMINDS_instances/issues||rel="noopener noreferrer" target="_blank"]]. The openMINDS development team reviews all your feedback regularly, in order to integrate these community-driven suggestions into the openMINDS_controlledTerms and openMINDS_instances (where applicable). In addition, your term suggestions will be evaluated as possible extensions for the SciGraph ontologies, powered by the FAIR Data Informatics (FDI) Lab - SciCrunch Infrastrucutre and the INCF Knowledge Space team.
54 +
55 +(% class="wikigeneratedid" style="text-align: justify;" %)
56 +For further details on this metadata model, please check out the [[openMINDS controlledTerms GitHub repository>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]].
Public

openMINDS