Wiki source code of Metadata models & schemas

Version 13.1 by lzehl on 2021/02/22 16:03

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4.1	4	The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
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5.1	7	Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
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2.1	10	Note that all metadata models are licensed under the MIT license.
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3.1	13	=== openMINDS core ===
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10.1	16	The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
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8.1	21	ACTORS
7.1	22	Affiliation
	23	ContactInformation
	24	Contribution
	25	Organization
	26	Person
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8.1	28	DATA
7.1	29	ContentType
	30	Copyright
	31	FileBundle
	32	FileInstance
	33	FileRepository
	34	Hash
	35	License
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8.1	39	MISCELLANEOUS
7.1	40	DigitalIdentifier
	41	DigitalIdentifierSchema
	42	Funding
	43	QuantitativeValue
	44	QuantitativeValueRange
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8.1	46	PRODUCTS
7.1	47	Dataset
	48	DatasetVersion
	49	MetaDataModel
	50	MetaDataModelVersion
	51	Model
	52	ModelVersion
	53	Project
	54	Software
	55	SoftwareVersion
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8.1	59	RESEARCH
7.1	60	ParameterSetting
	61	Protocol
	62	ProtocolExecution
	63	Subject
	64	SubjectGroup
	65	SubjectGroupState
	66	SubjectState
	67	TissueSample
	68	TissueSampleCollection
	69	TissueSampleCollectionState
	70	TissueSampleState
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	72	{{/container}}
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3.1	74	=== openMINDS SANDS ===
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	77	The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
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	82	AnatomicalEntity
	83	AnatomicalEntityRelation
	84	Annotation
	85	AtlasTerminology
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	89	BrainAtlas
	90	BrainAtlasVersion
	91	CoordinatePoint
	92	CoordinateSpace
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	96	Electrode
	97	ElectrodeArray
	98	ElectrodeContact
	99	Image
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	101	{{/container}}
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12.1	103	=== openMINDS controlledTerms - schemas ===
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13.1	106	The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
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	111	AgeCategory
	112	AnatomicalAxesOrientation
	113	BehavioralTask
	114	BiologicalSex
	115	CellType
	116	ContributionType
	117	CriteriaQualityType
	118	DatasetType
	119	Disease
	120	DiseaseModel
	121	EthicsAssessment
	122	FileBundleGrouping
13.1	123	FileUsageRole
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	127	Genotype
	128	Language
	129	Laterality
	130	MetaDataModelType
	131	Modality
	132	ModelAbstractionLevel
	133	ModelScope
	134	OperatingDevice
	135	OperatingSystem
	136	Organ
	137	Phenotype
13.1	138	PreparationType
	139	ProductAccessibility
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	143	ProgrammingLanguage
	144	QualitativeOverlap
	145	SoftwareApplicationCategory
	146	SoftwareFeature
	147	Species
	148	Strain
	149	Technique
13.1	150	TermSuggestion
12.1	151	Terminology
	152	TissueSampleType
	153	TypeOfUncertainty
	154	UnitOfMeasurement
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	156	{{/container}}
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	159	Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
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2.1	161	=== openMINDS instances ===
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Wiki source code of Metadata models & schemas

openMINDS