Wiki source code of Metadata models & schemas

Version 14.1 by lzehl on 2021/02/22 16:12
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4 The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
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7 Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
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10 Note that all metadata models are licensed under the MIT license.
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13 === openMINDS core ===
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16 The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
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21 **ACTORS**
22 Affiliation
23 ContactInformation
24 Contribution
25 Organization
26 Person
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28 **DATA**
29 ContentType
30 Copyright
31 FileBundle
32 FileInstance
33 FileRepository
34 Hash
35 License
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39 **MISCELLANEOUS**
40 DigitalIdentifier
41 DigitalIdentifierSchema
42 Funding
43 QuantitativeValue
44 QuantitativeValueRange
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46 **PRODUCTS**
47 Dataset
48 DatasetVersion
49 MetaDataModel
50 MetaDataModelVersion
51 Model
52 ModelVersion
53 Project
54 Software
55 SoftwareVersion
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59 **RESEARCH**
60 ParameterSetting
61 Protocol
62 ProtocolExecution
63 Subject
64 SubjectGroup
65 SubjectGroupState
66 SubjectState
67 TissueSample
68 TissueSampleCollection
69 TissueSampleCollectionState
70 TissueSampleState
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72 {{/container}}
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75 For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
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78 [[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core]]
79
80 === openMINDS SANDS ===
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83 The openMINDS SANDS (**S**patial **A**nchoring for **N**euroscience **D**ata **S**tructures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
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88 AnatomicalEntity
89 AnatomicalEntityRelation
90 Annotation
91 AtlasTerminology
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95 BrainAtlas
96 BrainAtlasVersion
97 CoordinatePoint
98 CoordinateSpace
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102 Electrode
103 ElectrodeArray
104 ElectrodeContact
105 Image
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107 {{/container}}
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110 For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
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113 [[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
114
115 === openMINDS controlledTerms - schemas ===
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118 The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
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123 AgeCategory
124 AnatomicalAxesOrientation
125 BehavioralTask
126 BiologicalSex
127 CellType
128 ContributionType
129 CriteriaQualityType
130 DatasetType
131 Disease
132 DiseaseModel
133 EthicsAssessment
134 FileBundleGrouping
135 FileUsageRole
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139 Genotype
140 Language
141 Laterality
142 MetaDataModelType
143 Modality
144 ModelAbstractionLevel
145 ModelScope
146 OperatingDevice
147 OperatingSystem
148 Organ
149 Phenotype
150 PreparationType
151 ProductAccessibility
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155 ProgrammingLanguage
156 QualitativeOverlap
157 SoftwareApplicationCategory
158 SoftwareFeature
159 Species
160 Strain
161 Technique
162 TermSuggestion
163 Terminology
164 TissueSampleType
165 TypeOfUncertainty
166 UnitOfMeasurement
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168 {{/container}}
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171 Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
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174 For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
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177 [[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
178
179 === openMINDS instances ===
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181 xxx
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openMINDS