Changes for page 03. Building and simulating a simple model
Last modified by adavison on 2022/10/04 13:55
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... ... @@ -166,14 +166,14 @@ 166 166 \\(% style="color:#000000" %)"""Simple network model using PyNN""" 167 167 \\import pyNN.nest as sim(%%) 168 168 (% style="color:#000000" %)from pyNN.utility.plotting import Figure, Panel(%%) 169 -(% style="color:#e74c3c" %)from pyNN.random import RandomDistribution , NumpyRNG(%%)169 +(% style="color:#e74c3c" %)from pyNN.random import RandomDistribution(%%) 170 170 (% style="color:#000000" %)sim.setup(timestep=0.1)(%%) 171 -(% style="color:#e74c3c" %)rng = NumpyRNG(seed=1)(%%) 172 172 (% style="color:#000000" %)cell_type = sim.IF_curr_exp( 173 - (% style="color:#e74c3c" %) v_rest=RandomDistribution('normal', mu=-65.0, sigma=1.0, rng=rng), 174 - v_thresh=RandomDistribution('normal', mu=-55.0, sigma=1.0, rng=rng), 175 - v_reset=RandomDistribution('normal', mu=-65.0, sigma=1.0, rng=rng), (%%) 176 -(% style="color:#000000" %) tau_refrac=1, tau_m=10, cm=1, i_offset=1.1) 172 + (% style="color:#e74c3c" %) v_rest=RandomDistribution('normal', mu=-65.0, sigma=1.0), 173 + v_thresh=RandomDistribution('normal', mu=-55.0, sigma=1.0), 174 + v_reset=RandomDistribution('normal', mu=-65.0, sigma=1.0), (%%) 175 +(% style="color:#000000" %) tau_refrac=1, tau_m=10, cm=1, i_offset=1.1)(%%) 176 + 177 177 178 178 **...** 179 179 ... ... @@ -263,7 +263,7 @@ 263 263 264 264 **...** 265 265 (% style="color:#000000" %)population2.record("v")(%%) 266 -(% style="color:#e74c3c" %)connection_algorithm = sim.FixedProbabilityConnector(p_connect=0.5 , rng=rng)266 +(% style="color:#e74c3c" %)connection_algorithm = sim.FixedProbabilityConnector(p_connect=0.5) 267 267 synapse_type = sim.StaticSynapse(weight=0.5, delay=0.5) 268 268 connections = sim.Projection(population1, population2, connection_algorithm, synapse_type)(%%) 269 269 (% style="color:#000000" %)sim.run(100.0)(%%) ... ... @@ -307,20 +307,19 @@ 307 307 \\(% style="color:#000000" %)"""Simple network model using PyNN""" 308 308 \\import pyNN.(% style="color:#e74c3c" %)neuron(% style="color:#000000" %) as sim(%%) 309 309 (% style="color:#000000" %)from pyNN.utility.plotting import Figure, Panel(%%) 310 -(% style="color:#000000" %)from pyNN.random import RandomDistribution , NumpyRNG(%%)310 +(% style="color:#000000" %)from pyNN.random import RandomDistribution(%%) 311 311 (% style="color:#000000" %)sim.setup(timestep=0.1)(%%) 312 -(% style="color:#000000" %)rng = NumpyRNG(seed=1)(%%) 313 313 (% style="color:#000000" %)cell_type = sim.IF_curr_exp( 314 - v_rest=RandomDistribution('normal', mu=-65.0, sigma=1.0 , rng=rng),315 - v_thresh=RandomDistribution('normal', mu=-55.0, sigma=1.0 , rng=rng),316 - v_reset=RandomDistribution('normal', mu=-65.0, sigma=1.0, rng=rng),317 - tau_refrac=1, tau_m=10, cm=1, i_offset=1.1) 318 -population1 = sim.Population(100, cell_type, label="Population 1") 319 -population2 = sim.Population(100, cell_type, label="Population 2") 313 + (% style="color:#e74c3c" %) (% style="color:#000000" %)v_rest=RandomDistribution('normal', mu=-65.0, sigma=1.0), 314 + v_thresh=RandomDistribution('normal', mu=-55.0, sigma=1.0), 315 + v_reset=RandomDistribution('normal', mu=-65.0, sigma=1.0), (%%) 316 +(% style="color:#000000" %) tau_refrac=1, tau_m=10, cm=1, i_offset=1.1)(%%) 317 +(% style="color:#000000" %)population1 = sim.Population(100, cell_type, label="Population 1")(%%) 318 +(% style="color:#000000" %)population2 = sim.Population(100, cell_type, label="Population 2") 320 320 population2.set(i_offset=0) 321 321 population1.record("v") 322 -population2.record("v") 323 -connection_algorithm = sim.FixedProbabilityConnector(p_connect=0.5 , rng=rng)321 +population2.record("v")(%%) 322 +(% style="color:#000000" %)connection_algorithm = sim.FixedProbabilityConnector(p_connect=0.5) 324 324 synapse_type = sim.StaticSynapse(weight=0.5, delay=0.5) 325 325 connections = sim.Projection(population1, population2, connection_algorithm, synapse_type)(%%) 326 326 (% style="color:#000000" %)sim.run(100.0)(%%)