Last modified by adavison on 2022/10/04 13:53

From version 27.12
edited by shailesh
on 2021/10/08 11:20
Change comment: There is no comment for this version
To version 27.9
edited by shailesh
on 2021/10/08 11:06
Change comment: There is no comment for this version

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... ... @@ -91,12 +91,6 @@
91 91  \\(% style="color:#000000" %)python3 -m venv pynn_env
92 92  )))
93 93  
94 -(% class="box warningmessage" %)
95 -(((
96 -**Note:**
97 -\\Observe that this command is as 'python3' and not simply 'python'. This is because Ubuntu 20, as default, understands only the former. You can find on the Internet various ways to have 'python' also refer to 'python3', but for the purposes of this tutorial we shall keep things simple and try to work with the bare minimum changes to the system.
98 -)))
99 -
100 100  This will create a sub-directory named 'pynn_env' within our project directory, with several files and sub-directories. Let us take a look at the 'site-packages' directory.
101 101  
102 102  (% class="box infomessage" %)
... ... @@ -146,17 +146,11 @@
146 146  (% class="box infomessage" %)
147 147  (((
148 148  **Screencast** - terminal
149 -\\(% style="color:#000000" %)python
143 +\\(% style="color:#000000" %)python3
150 150  \\import brian2
151 151  \\exit()
152 152  )))
153 153  
154 -(% class="box warningmessage" %)
155 -(((
156 -**Note: **
157 -\\You might remember that earlier in this tutorial we had to use the term 'python3' to run Python on our system. But here, as in the rest of this tutorial, we shall simply write 'python'. This is possible because once we have activated our virtual environment, this environment understands that both 'python' and 'python3' are equivalent.
158 -)))
159 -
160 160  If there are no error messages here, and the import is successful, then we have completed installing Brian 2.
161 161  
162 162  We shall now move on to install the NEST simulator. Unlike Brian 2, NEST is not a Python package and therefore it cannot be installed via the 'pip' command.
... ... @@ -184,7 +184,7 @@
184 184  (% class="box infomessage" %)
185 185  (((
186 186  **Screencast** - terminal
187 -\\(% style="color:#000000" %)python
175 +\\(% style="color:#000000" %)python3
188 188  \\import nest
189 189  \\exit()
190 190  )))
... ... @@ -218,7 +218,7 @@
218 218  (% class="box infomessage" %)
219 219  (((
220 220  **Screencast** - terminal
221 -\\(% style="color:#000000" %)python
209 +\\(% style="color:#000000" %)python3
222 222  \\from neuron import h
223 223  \\exit()
224 224  )))
... ... @@ -236,15 +236,6 @@
236 236  
237 237  (% class="box successmessage" %)
238 238  (((
239 -**Slide** useful links
240 -\\[[(% style="color:#000000" %)https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]](%%)
241 -[[(% style="color:#000000" %)https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]](%%)
242 -[[(% style="color:#000000" %)https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]]
243 -)))
244 -
245 -
246 -(% class="box successmessage" %)
247 -(((
248 248  **Slide** acknowledgements, contact information
249 249  )))
250 250  
... ... @@ -253,3 +253,9 @@
253 253  
254 254  (% class="wikigeneratedid" %)
255 255  For more information visit neuralensemble.org/PyNN. If you have questions you can contact us through the PyNN Github project, the NeuralEnsemble forum, EBRAINS support, or the EBRAINS Community.
235 +
236 +
237 +(% class="wikigeneratedid" %)
238 +[[https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]]
239 +[[https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]]
240 +[[https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]]