Changes for page 02. Installing PyNN - Linux
Last modified by adavison on 2022/10/04 13:53
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... ... @@ -91,12 +91,6 @@ 91 91 \\(% style="color:#000000" %)python3 -m venv pynn_env 92 92 ))) 93 93 94 -(% class="box warningmessage" %) 95 -((( 96 -**Note:** 97 -\\Observe that this command is as 'python3' and not simply 'python'. This is because Ubuntu 20, as default, understands only the former. You can find on the Internet various ways to have 'python' also refer to 'python3', but for the purposes of this tutorial we shall keep things simple and try to work with the bare minimum changes to the system. 98 -))) 99 - 100 100 This will create a sub-directory named 'pynn_env' within our project directory, with several files and sub-directories. Let us take a look at the 'site-packages' directory. 101 101 102 102 (% class="box infomessage" %) ... ... @@ -146,17 +146,11 @@ 146 146 (% class="box infomessage" %) 147 147 ((( 148 148 **Screencast** - terminal 149 -\\(% style="color:#000000" %)python 143 +\\(% style="color:#000000" %)python3 150 150 \\import brian2 151 151 \\exit() 152 152 ))) 153 153 154 -(% class="box warningmessage" %) 155 -((( 156 -**Note: ** 157 -\\You might remember that earlier in this tutorial we had to use the term 'python3' to run Python on our system. But here, as in the rest of this tutorial, we shall simply write 'python'. This is possible because once we have activated our virtual environment, this environment understands that both 'python' and 'python3' are equivalent. 158 -))) 159 - 160 160 If there are no error messages here, and the import is successful, then we have completed installing Brian 2. 161 161 162 162 We shall now move on to install the NEST simulator. Unlike Brian 2, NEST is not a Python package and therefore it cannot be installed via the 'pip' command. ... ... @@ -184,7 +184,7 @@ 184 184 (% class="box infomessage" %) 185 185 ((( 186 186 **Screencast** - terminal 187 -\\(% style="color:#000000" %)python 175 +\\(% style="color:#000000" %)python3 188 188 \\import nest 189 189 \\exit() 190 190 ))) ... ... @@ -218,7 +218,7 @@ 218 218 (% class="box infomessage" %) 219 219 ((( 220 220 **Screencast** - terminal 221 -\\(% style="color:#000000" %)python 209 +\\(% style="color:#000000" %)python3 222 222 \\from neuron import h 223 223 \\exit() 224 224 ))) ... ... @@ -230,19 +230,10 @@ 230 230 **Slide** recap of learning objectives 231 231 ))) 232 232 233 -That is the end of this tutorial, in which I've demonstrated how to install PyNN, and other required simulators, in a Linux system. You are now ready to start modeling! To learn about model development in PyNN, do take a look at our next tutorial. Also, we will be releasing a series of tutorials, throughout the rest of 2021 and 2022, to introduce these more advanced features of PyNN, so keep an eye on the EBRAINS website.221 +That is the end of this tutorial, in which I've demonstrated how to install PyNN, and other required simulators, in a Linux system. You are now ready to start modeling! To learn about model development in PyNN, do take a look at our next tutorial. 234 234 235 -(% class="box successmessage" %) 236 -((( 237 -**Slide** useful links 238 -\\[[(% style="color:#000000" %)https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]](%%) 239 -[[(% style="color:#000000" %)https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]](%%) 240 -[[(% style="color:#000000" %)https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]](%%) 241 -[[(% style="color:#000000" %)https:~~/~~/neuron.yale.edu/neuron/>>https://neuron.yale.edu/neuron/]] 242 -))) 223 +Als, we will be releasing a series of tutorials, throughout the rest of 2021 and 2022, to introduce these more advanced features of PyNN, so keep an eye on the EBRAINS website. 243 243 244 -We have listed here some links that might be of interest to users who wish to find more details about the various softwares employed in this tutorial. 245 - 246 246 (% class="box successmessage" %) 247 247 ((( 248 248 **Slide** acknowledgements, contact information ... ... @@ -253,3 +253,9 @@ 253 253 254 254 (% class="wikigeneratedid" %) 255 255 For more information visit neuralensemble.org/PyNN. If you have questions you can contact us through the PyNN Github project, the NeuralEnsemble forum, EBRAINS support, or the EBRAINS Community. 235 + 236 + 237 +(% class="wikigeneratedid" %) 238 +[[https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]] 239 +[[https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]] 240 +[[https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]]