Changes for page 02. Installing PyNN - Linux
Last modified by adavison on 2022/10/04 13:53
Summary
-
Page properties (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Content
-
... ... @@ -91,6 +91,12 @@ 91 91 \\(% style="color:#000000" %)python3 -m venv pynn_env 92 92 ))) 93 93 94 +(% class="box warningmessage" %) 95 +((( 96 +**Note:** 97 +\\Observe that this command is as 'python3' and not simply 'python'. This is because Ubuntu 20, as default, understands only the former. You can find on the Internet various ways to have 'python' also refer to 'python3', but for the purposes of this tutorial we shall keep things simple and try to work with the bare minimum changes to the system. 98 +))) 99 + 94 94 This will create a sub-directory named 'pynn_env' within our project directory, with several files and sub-directories. Let us take a look at the 'site-packages' directory. 95 95 96 96 (% class="box infomessage" %) ... ... @@ -140,11 +140,17 @@ 140 140 (% class="box infomessage" %) 141 141 ((( 142 142 **Screencast** - terminal 143 -\\(% style="color:#000000" %)python 3149 +\\(% style="color:#000000" %)python 144 144 \\import brian2 145 145 \\exit() 146 146 ))) 147 147 154 +(% class="box warningmessage" %) 155 +((( 156 +**Note: ** 157 +\\You might remember that earlier in this tutorial we had to use the term 'python3' to run Python on our system. But here, as in the rest of this tutorial, we shall simply write 'python'. This is possible because once we have activated our virtual environment, this environment understands that both 'python' and 'python3' are equivalent. 158 +))) 159 + 148 148 If there are no error messages here, and the import is successful, then we have completed installing Brian 2. 149 149 150 150 We shall now move on to install the NEST simulator. Unlike Brian 2, NEST is not a Python package and therefore it cannot be installed via the 'pip' command. ... ... @@ -172,7 +172,7 @@ 172 172 (% class="box infomessage" %) 173 173 ((( 174 174 **Screencast** - terminal 175 -\\(% style="color:#000000" %)python 3187 +\\(% style="color:#000000" %)python 176 176 \\import nest 177 177 \\exit() 178 178 ))) ... ... @@ -206,7 +206,7 @@ 206 206 (% class="box infomessage" %) 207 207 ((( 208 208 **Screencast** - terminal 209 -\\(% style="color:#000000" %)python 3221 +\\(% style="color:#000000" %)python 210 210 \\from neuron import h 211 211 \\exit() 212 212 ))) ... ... @@ -218,10 +218,19 @@ 218 218 **Slide** recap of learning objectives 219 219 ))) 220 220 221 -That is the end of this tutorial, in which I've demonstrated how to install PyNN, and other required simulators, in a Linux system. You are now ready to start modeling! To learn about model development in PyNN, do take a look at our next tutorial. 233 +That is the end of this tutorial, in which I've demonstrated how to install PyNN, and other required simulators, in a Linux system. You are now ready to start modeling! To learn about model development in PyNN, do take a look at our next tutorial. Also, we will be releasing a series of tutorials, throughout the rest of 2021 and 2022, to introduce these more advanced features of PyNN, so keep an eye on the EBRAINS website. 222 222 223 -Als, we will be releasing a series of tutorials, throughout the rest of 2021 and 2022, to introduce these more advanced features of PyNN, so keep an eye on the EBRAINS website. 235 +(% class="box successmessage" %) 236 +((( 237 +**Slide** useful links 238 +\\[[(% style="color:#000000" %)https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]](%%) 239 +[[(% style="color:#000000" %)https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]](%%) 240 +[[(% style="color:#000000" %)https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]](%%) 241 +[[(% style="color:#000000" %)https:~~/~~/neuron.yale.edu/neuron/>>https://neuron.yale.edu/neuron/]] 242 +))) 224 224 244 +We have listed here some links that might be of interest to users who wish to find more details about the various softwares employed in this tutorial. 245 + 225 225 (% class="box successmessage" %) 226 226 ((( 227 227 **Slide** acknowledgements, contact information ... ... @@ -232,9 +232,3 @@ 232 232 233 233 (% class="wikigeneratedid" %) 234 234 For more information visit neuralensemble.org/PyNN. If you have questions you can contact us through the PyNN Github project, the NeuralEnsemble forum, EBRAINS support, or the EBRAINS Community. 235 - 236 - 237 -(% class="wikigeneratedid" %) 238 -[[https:~~/~~/realpython.com/python-virtual-environments-a-primer/>>https://realpython.com/python-virtual-environments-a-primer/]] 239 -[[https:~~/~~/briansimulator.org/install/>>https://briansimulator.org/install/]] 240 -[[https:~~/~~/nest-simulator.readthedocs.io/en/v3.1/installation/index.html>>https://nest-simulator.readthedocs.io/en/v3.1/installation/index.html]]