Last modified by adavison on 2022/10/04 13:53
From version 37.3
edited by shailesh
on 2021/10/14 17:22
Change comment: There is no comment for this version
To version 33.1
edited by shailesh
on 2021/10/11 10:40
Change comment: There is no comment for this version

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... ... @@ -96,7 +96,7 @@
96 96  (% class="box infomessage" %)
97 97  (((
98 98  **Screencast** - file explorer
99 -\\(% style="color:#000000" %)<< show directory contents; especially lib/python3.8/site-packages >>
99 +\\(% style="color:#000000" %)<< show directory contents; especially lib/python3.9/site-packages >>
100 100  )))
101 101  
102 102  As you see here, only a limited number of basic packages have currently been installed in this virtual environment. In the steps ahead, we shall install various other packages, and you shall see that these would be reflected here.
... ... @@ -139,7 +139,7 @@
139 139  (% class="box infomessage" %)
140 140  (((
141 141  **Screencast** - file explorer
142 -\\(% style="color:#000000" %)<< show directory contents lib/python3.8/site-packages >>
142 +\\(% style="color:#000000" %)<< show directory contents lib/python3.9/site-packages >>
143 143  )))
144 144  
145 145  To confirm that we have properly installed Brian 2 on our computer, we can test as follows:
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211 211  (% class="box infomessage" %)
212 212  (((
213 213  **Screencast** - terminal
214 -\\(% style="color:#000000" %)nrniv
215 -\\quit()
214 +\\(% style="color:#000000" %)nrngui
216 216  )))
217 217  
218 218  This will display the NEURON banner, which mentions the version amongst other info. Here, as we can see, we have now installed NEURON v8.0.0 on our system. Let us next verify that this is indeed accessible via Python.
... ... @@ -232,13 +232,13 @@
232 232  (% class="box infomessage" %)
233 233  (((
234 234  **Screencast** - terminal
235 -\\(% style="color:#000000" %)pip install PyNN
234 +\\(% style="color:#000000" %)pip install pyNN
236 236  )))
237 237  
238 238  (% class="box warningmessage" %)
239 239  (((
240 240  **Note:**
241 -\\Note that PyNN project is spelt with a captial P, small y, and two captital N. The pip command is case-insensitive, so you may write it differently here. But the Python module, as we shall see ahead, is case-sensitive and is spelt starting with a small P. This is in line with general Python convention, whereby package names start with small alphabets. Thus, while importing PyNN module via Python, it needs to be written as 'pyNN'.
240 +\\Note that PyNN project is spelt with a captial P, small y, and two captital N. But the Python module, as seen here, is spelt starting with a small P. This is in line with general Python convention, where package names start with small alphabets.
242 242  )))
243 243  
244 244  To verify that PyNN has been successfully installed on our system, and that it is indeed able to communicate with the other simulators that we installed earlier, we can try running:
... ... @@ -255,7 +255,7 @@
255 255  (% style="color:#000000" %)sim.end()
256 256  )))
257 257  
258 -This confirms that PyNN has been properly setup, and also that is able to employ Brian 2. To verify similary that PyNN is also able to communicate with NEURON and NEST simulators:
257 +This confirms that PyNN has been properly setup, and also that is able to employ Brian 2. To verify similary test that PyNN is also able to communicate with NEURON and NEST simulators:
259 259  
260 260  (% class="box infomessage" %)
261 261  (((