Changes for page 02. Installing PyNN - Linux
Last modified by adavison on 2022/10/04 13:53
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edited by annedevismes
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on 2021/10/19 08:59
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To version 40.1
edited by annedevismes
on 2021/10/19 08:44
on 2021/10/19 08:44
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... ... @@ -37,7 +37,7 @@ 37 37 **Slide** listing learning objectives 38 38 ))) 39 39 40 -In this tutorial, I will guide you through setting up PyNN, together with the Brian 2,NEST,andNEURON, and simulators, on a Linux environment. Note that we have a dedicated version of this tutorial for other environments, such as Mac OS, Windows, and EBRAINS Jupyter Lab.40 +In this tutorial, I will guide you through setting up PyNN, together with the NEST, NEURON, and Brian 2 simulators, on a Linux environment. Note that we have a dedicated version of this tutorial for other environments, such as Mac OS, Windows, and EBRAINS Jupyter Lab. 41 41 42 42 (% class="box successmessage" %) 43 43 ((( ... ... @@ -69,7 +69,7 @@ 69 69 cd pynn_project 70 70 ))) 71 71 72 -Next, we will create a virtual environment within this directory. Python 3 provides support for creating virtual environments. Since Python 3.6, the recommended method forcreatinga new virtual environment is as follows.72 +Next, we will create a virtual environment within this directory. Python 3 provides support for creating virtual environments. Since Python 3.6, the recommended method to create a new virtual environment is as follows. 73 73 74 74 (% class="box errormessage" %) 75 75 ((( ... ... @@ -123,7 +123,7 @@ 123 123 You might be required to run the above command every time you open a new terminal window. Check that the terminal command prompt indicates the name of your virtual environment to confirm that you have indeed activated it. 124 124 ))) 125 125 126 -Now that we have our project's virtual environment setup, we are ready to install PyNN and other simulators. In general, it is advisable to install the various simulators (especially NEURON and NEST) prior to installing PyNN, because PyNN will then auto compile NEURON's NMODL fles and NEST's extensions during installation. In this tutorial, we will adopt this approach and begin by installing the simulators. For the purposes of this tutorial, we will demonstrate the installation of Brian2, NE ST, and NEURONsimulators.126 +Now that we have our project's virtual environment setup, we are ready to install PyNN and other simulators. In general, it is advisable to install the various simulators (especially NEURON and NEST) prior to installing PyNN, because PyNN will then auto compile NEURON's NMODL fles and NEST's extensions during installation. In this tutorial, we will adopt this approach and begin by installing the simulators. For the purposes of this tutorial, we will demonstrate the installation of Brian2, NEURON, and NEST simulators. 127 127 128 128 (% class="box errormessage" %) 129 129 (((