Changes for page 02. Installing PyNN - Linux
Last modified by adavison on 2022/10/04 13:53
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... ... @@ -37,7 +37,7 @@ 37 37 **Slide** listing learning objectives 38 38 ))) 39 39 40 -In this tutorial, I will guide you through setting up PyNN, together with the Brian 2, NEST, and NEURON simulators, on a Linux environment. Note that we have a dedicated version of this tutorial for other environments, such as Mac OS, Windows, and EBRAINS Jupyter Lab. 40 +In this tutorial, I will guide you through setting up PyNN, together with the Brian 2, NEST, and NEURON, and simulators, on a Linux environment. Note that we have a dedicated version of this tutorial for other environments, such as Mac OS, Windows, and EBRAINS Jupyter Lab. 41 41 42 42 (% class="box successmessage" %) 43 43 ((( ... ... @@ -123,18 +123,6 @@ 123 123 You might be required to run the above command every time you open a new terminal window. Check that the terminal command prompt indicates the name of your virtual environment to confirm that you have indeed activated it. 124 124 ))) 125 125 126 -Before we proceed, let us run the following commands to ensure that our environment is setup as required: 127 - 128 - 129 -(% class="box infomessage" %) 130 -((( 131 -**Screencast** - terminal 132 -\\(% style="color:#000000" %)\\pip install ~-~-upgrade pip 133 -sudo apt install make 134 -))) 135 - 136 - 137 - 138 138 Now that we have our project's virtual environment setup, we are ready to install PyNN and other simulators. In general, it is advisable to install the various simulators (especially NEURON and NEST) prior to installing PyNN, because PyNN will then auto compile NEURON's NMODL fles and NEST's extensions during installation. In this tutorial, we will adopt this approach and begin by installing the simulators. For the purposes of this tutorial, we will demonstrate the installation of Brian2, NEST, and NEURON simulators. 139 139 140 140 (% class="box errormessage" %) ... ... @@ -299,14 +299,6 @@ 299 299 300 300 This confirms that all the required software packages have been successfully completed and are functioning as expected. 301 301 302 -As a last step, we will install a Python package named 'matplotlib' that would come in handy in the tutorials ahead. 303 - 304 -(% class="box infomessage" %) 305 -((( 306 -**Screencast** - terminal 307 -\\(% style="color:#000000" %)pip install matplotlib 308 -))) 309 - 310 310 (% class="box successmessage" %) 311 311 ((( 312 312 **Slide** recap of learning objectives