Changes for page 02. Installing PyNN - Linux
Last modified by adavison on 2022/10/04 13:53
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... ... @@ -44,7 +44,7 @@ 44 44 **Slide** listing prerequisites 45 45 ))) 46 46 47 -I will demonstrate the installation on a computer with Ubuntu 20.04 OS installed. The steps are likely to remain very similar for other versions of Ubuntu OS and are also not expected to vary significantly for other Linux distributions. In the latter case, you can find information on the Internet about how to carry out the equivalent of the tasks demonstrated here using Ubuntu OS. Also, this tutorial focuses only on Python 3, because Python 2 is no longer supported. It is recommended to use Python version 3.6 or higher. I will be using Python 3.8.10 in this tutorial, because it is the default version provided with Ubuntu 20.04.47 +I will demonstrate the installation on a computer with Ubuntu 20.04 OS installed. The steps are likely to remain very similar for other versions of Ubuntu OS and are also not expected to vary significantly for other Linux distributions. In the latter case, you can find information on the Internet about how to carry out the equivalent of the tasks demonstrated here. Also, this tutorial focuses only on Python 3, because Python 2 is no longer supported. It is recommended to use Python version 3.6 or higher. I will be using Python 3.8.10 in this tutorial, because it is the default version provided with Ubuntu 20.04. 48 48 49 49 (% class="box errormessage" %) 50 50 ((( ... ... @@ -69,22 +69,25 @@ 69 69 cd pynn_project 70 70 ))) 71 71 72 -Next, we will create a virtual environment within this directory. Python 3 provides support for creating virtual environments. SincePython 3.6,the recommendedmethodforcreatinganewvirtual environment is as follows.72 +Next, we will create a virtual environment within this directory. Python 3 provides support for creating virtual environments. To use this, we first install the package named 'python3-venv': 73 73 74 -(% class="box errormessage" %)74 +(% class="box infomessage" %) 75 75 ((( 76 -** Note**76 +**Screencast** - terminal 77 77 78 - 79 -For older versions of Python 3, you might be required to manually install `python3-venv` package before being able to run the below command. To install, run: 80 -\\sudo apt-get install python3-venv 81 -\\More recent versions of Python 3 (e.g., v3.9) already have this pre-installed. 78 +(% style="color:#000000" %) 79 +sudo apt-get install python3-venv 82 82 ))) 83 83 82 +And once this is installed, we can create a new virtual environment as follows. 83 + 84 84 (% class="box infomessage" %) 85 85 ((( 86 86 **Screencast** - terminal 87 -\\(% style="color:#000000" %)python3 -m venv pynn_env 87 + 88 +(% style="color:#000000" %) 89 +sudo apt-get install python3-venv 90 +python3 -m venv pynn_env 88 88 ))) 89 89 90 90 (% class="box warningmessage" %) ... ... @@ -216,7 +216,7 @@ 216 216 217 217 If there are no error messages here, and the import is successful, we have completed installing NEST simulator and are able to load it via Python. 218 218 219 -We next move on to the third simulator, NEURON. Similar to Brian2, the installation for NEURON can be easily done via the 'pip' command. Do note that this method of installation does not auto-enable MPI support. Do visit the NEURON website if you wish to install on clusters or HPC machines. 222 +We next move on to the third simulator, NEURON. Similar to Brian2, the installation for NEURON can be easily done via the 'pip' command. Do note that this method of installation does not auto-enable MPI support, which would be required for running simulations in parallel. Do visit the NEURON website if you wish to install on clusters or HPC machines. 220 220 221 221 (% class="box infomessage" %) 222 222 (((