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21	21	== (% style="color:#c0392b" %)QuickSTEPS:(%%) ==
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23		-== Open //QuickNII// and load your images ==
	23	+Open the //QuickNII// program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file (or JSON file if you have one from before)
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25		-Open the //QuickNII// program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file.
26		-
27	27	=== **Anchoring procedure** ===
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29	29	The alignment procedure consists of two main tasks:
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49	49	== (% style="color:#c0392b" %)**Nonlinear adjustment with VisuAlign**(%%) ==
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51		-**[[image:VisuAlign_illustration.png]]**
	49	+**[[image:Collabs.quint.Image registration to reference atlas using QuickNII.WebHome@VisuAlign_illustration.png]]**
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53		- A detailed //VisuAlign //user manual [[can be found here>>url:https://www.nitrc.org/docman/?group_id=1426]].
	51	+ A detailed //VisuAlign //user manual [[can be found here>>https://www.nitrc.org/docman/index.php?group_id=1426&selected_doc_group_id=5980&language_id=1#folder]].
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55	55	=== **The basic steps are the following:** ===
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60	60	1. You can toggle “outline mode” by pulling the opacity slider to the far right. A colour picker on the right side of the slider becomes active for changing the outline colour.
61	61	1. Enabling “Debug mode” from the View menu toggles the display of triangles representing the deformation field, and allows you to change the colour of the triangles.
62	62	1. Finally, use File -> Save As to save your fine-tuned alignment as a new JSON file.
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