Changes for page 3. Tutorials and manuals
Last modified by puchades on 2021/12/07 11:18
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... ... @@ -1,6 +1,6 @@ 1 1 == (% style="color:#c0392b" %)Video tutorial(%%) == 2 2 3 -== 3 +== == 4 4 5 5 == (% style="color:#c0392b" %)Preparation of the image series(%%) == 6 6 ... ... @@ -22,11 +22,13 @@ 22 22 23 23 Open the //QuickNII// program from the .exe file. Once the program opens, click the **Manage data button** and load your XML file (or JSON file if you have one from before) 24 24 25 -(% class="box infomessage" %) 26 -((( 27 -**Anchoring procedure **The alignment procedure consists of two main tasks: 1. Determine the dorsoventral and mediolateral cutting angle of the section series, apply same angles for all slices. 2. Adjust the atlas slices generated along these angles to match individual sections. 28 -))) 25 +=== **Anchoring procedure** === 29 29 27 +The alignment procedure consists of two main tasks: 28 + 29 +1. Determine the dorsoventral and mediolateral cutting angle of the section series, apply same angles for all slices. 30 +1. Adjust the atlas slices generated along these angles to match individual sections. 31 + 30 30 === A) To determine the cutting angles: === 31 31 32 32 1. Open an image in the **beginning** of the series, and use anatomical landmarks to find the approximate anteroposterior position of the section in the atlas. Select the atlas modality to be overlaid on the image (MRI, Atlas, etc.)