Changes for page 2. Example of use

Last modified by puchades on 2020/10/06 13:18
From version 24.1
edited by puchades
on 2020/09/30 15:01
Change comment: There is no comment for this version
To version 22.1
edited by puchades
on 2020/09/30 14:59
Change comment: Uploaded new attachment "Figure4.jpg", version {1}

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18 18  If you have 2D image series with labelled cells, you can use the QUINT workflow in order to determine the cell load per atlas region and even create a personalized analysis by defining your own grouping of regions from the reference atlas regions. You will start with registration using QuickNII and VisuAlign, then segment the cells  with ilastik and quantify with Nutil Quantifier. More details can be found here: [[QUINT workflow>>https://wiki.ebrains.eu/bin/view/Collabs/quint]]
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20 -[[image:Figure4.jpg]]
20 +[[image:QUINT_workflow_Plaques.png||style="float:left"]]
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22 -Image from Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: [[10.3389/fninf.2020.00037>>url:https://www.frontiersin.org/articles/10.3389/fninf.2020.00037/full]]
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