Changes for page 2. Example of use

Last modified by puchades on 2020/10/06 13:18
From version 27.1
edited by puchades
on 2020/09/30 15:04
Change comment: There is no comment for this version
To version 29.1
edited by puchades
on 2020/10/01 09:43
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,17 +1,19 @@
1 1  == (% style="color:#c0392b" %)How can I identify brain regions in my images?(%%) ==
2 2  
3 3  (% class="wikigeneratedid" %)
4 -By using QuickNII, you will be able to register this image series to the mouse reference atlas version of your choice and obtain adapted atlas maps and coordinates. Further, in-plane non-linear adjustments can be made with VisuAlign in order to obtain a more precise registration. The regions shown in the example below are color coded and correspond to Mouse CCFv3_2017 atlas
4 +By using QuickNII, you will be able to register this image series to the mouse reference atlas version of your choice and obtain adapted atlas maps and coordinates. Further, in-plane non-linear adjustments can be made with VisuAlign in order to obtain a more precise registration. The regions shown in the example below are color coded and correspond to Mouse CCFv3_2017 atlas ( Oh et al. 2014).
5 5  
6 6  (% class="wikigeneratedid" id="H" %)
7 7  (% style="color:#c0392b" %)[[image:Doublet_illust_NOP_tta.png]]
8 8  
9 9  
10 -== (% style="color:#c0392b" %)How can I map the position of my electrode?(%%) ==
10 +== (% style="color:#c0392b" %)How can I map the position of my reconstructed neuron?(%%) ==
11 11  
12 +After in-vivo electrophysiology experiments, the recorded neurons are filled with neurobiotin making them visible on histological images. These images are registered to the Mouse atlas CCFv3_2017 ( Oh et al. 2014). The extracted coordinates of the neuron soma and the coordinates of the neuronal arbor, could then be mapped in the 3D reference space.
12 12  
13 13  
14 14  
16 +
15 15  == (% style="color:#c0392b" %)How can I count my labelled cells?(%%) ==
16 16  
17 17  
... ... @@ -20,3 +20,6 @@
20 20  [[image:Figure4.jpg]]
21 21  
22 22  Image from Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. //Front. Neuroinform.// 14:37. doi: [[10.3389/fninf.2020.00037>>url:https://www.frontiersin.org/articles/10.3389/fninf.2020.00037/full]]
25 +
26 +
27 +== (% style="color:#c0392b" %)How can I map the position of my electrode?(%%) ==