Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -1,19 +1,17 @@
1	1	== (% style="color:#c0392b" %)How can I identify brain regions in my images?(%%) ==
2	2
3	3	(% class="wikigeneratedid" %)
4		-By using QuickNII, you will be able to register this image series to the mouse reference atlas version of your choice and obtain adapted atlas maps and coordinates. Further, in-plane non-linear adjustments can be made with VisuAlign in order to obtain a more precise registration. The regions shown in the example below are color coded and correspond to Mouse CCFv3_2017 atlas ( Oh et al. 2014).
	4	+By using QuickNII, you will be able to register this image series to the mouse reference atlas version of your choice and obtain adapted atlas maps and coordinates. Further, in-plane non-linear adjustments can be made with VisuAlign in order to obtain a more precise registration. The regions shown in the example below are color coded and correspond to Mouse CCFv3_2017 atlas
5	5
6	6	(% class="wikigeneratedid" id="H" %)
7	7	(% style="color:#c0392b" %)[[image:Doublet_illust_NOP_tta.png]]
8	8
9	9
10		-== (% style="color:#c0392b" %)How can I map the position of my reconstructed neuron?(%%) ==
	10	+== (% style="color:#c0392b" %)How can I map the position of my electrode?(%%) ==
11	11
12		-After in-vivo electrophysiology experiments, the recorded neurons are filled with neurobiotin making them visible on histological images. These images are registered to the Mouse atlas CCFv3_2017 ( Oh et al. 2014). The extracted coordinates of the neuron soma and the coordinates of the neuronal arbor, could then be mapped in the 3D reference space.
13	13
14	14
15	15
16		-
17	17	== (% style="color:#c0392b" %)How can I count my labelled cells?(%%) ==
18	18
19	19