Attention: The EBRAINS drive will be unavailable for most of the weekend starting the 25th October. Although the Lab is availble while the Drive is down, files that are stored in the Drive will not be loaded and you will be unable to save documents directly on the Lab.


Last modified by puchades on 2022/09/30 16:01

From version 23.1
edited by tomazvieira
on 2022/01/28 14:27
Change comment: Uploaded new attachment "image-20220128142757-1.png", version {1}
To version 24.1
edited by tomazvieira
on 2022/01/28 14:40
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -15,6 +15,28 @@
15 15  
16 16  [[image:image-20220125164204-2.png]]
17 17  
18 +
19 +=== Opening a Dataset from the data-proxy ===
20 +
21 +You can also load Neuroglancer Precomputed Chunks data from the data-proxy; The URLs for this kind of data follow the following scheme:
22 +\\##precomputed:~/~/https:~/~/data-proxy.ebrains.eu/api/buckets/(% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)my-bucket-name(% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)/path/inside/your/bucket(%%)##
23 +
24 +So, for example, to load the sample data inside the (% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)quint-demo(%%) bucket, under the path (% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)tg-ArcSwe_mice_precomputed/hbp-00138_122_381_423_s001.precomputed(% style="color:#000000" %) (%%) like in the example below:
25 +
26 +
27 +[[image:image-20220128142757-1.png]]
28 +
29 +=== ===
30 +
31 +you would type a URL like this:
32 +
33 +
34 +##precomputed:~/~/https:~/~/data-proxy.ebrains.eu/api/buckets/(% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)quint-demo(%%)/(% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)tg-ArcSwe_mice_precomputed/hbp-00138_122_381_423_s001.precomputed(%%)##
35 +
36 +this scheme is the same whether you're loading data into the Neuroglancer viewer or specifying an input URL in the export applet.
37 +
38 +=== Viewing 2D Data ===
39 +
18 18  If your dataset is 2D like in the example, you can click the "switch to xy layout" button at the top-right corner of the top-left quadrant of the viewport to use  asingle, 2D viewport:
19 19  
20 20  [[image:image-20220125164416-3.png]]