Changes for page 5. How to segment your objects with Webilastik
Last modified by puchades on 2022/09/30 16:01
From version 23.1
edited by tomazvieira
on 2022/01/28 14:27
on 2022/01/28 14:27
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To version 24.1
edited by tomazvieira
on 2022/01/28 14:40
on 2022/01/28 14:40
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... ... @@ -15,6 +15,28 @@ 15 15 16 16 [[image:image-20220125164204-2.png]] 17 17 18 + 19 +=== Opening a Dataset from the data-proxy === 20 + 21 +You can also load Neuroglancer Precomputed Chunks data from the data-proxy; The URLs for this kind of data follow the following scheme: 22 +\\##precomputed:~/~/https:~/~/data-proxy.ebrains.eu/api/buckets/(% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)my-bucket-name(% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)/path/inside/your/bucket(%%)## 23 + 24 +So, for example, to load the sample data inside the (% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)quint-demo(%%) bucket, under the path (% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)tg-ArcSwe_mice_precomputed/hbp-00138_122_381_423_s001.precomputed(% style="color:#000000" %) (%%) like in the example below: 25 + 26 + 27 +[[image:image-20220128142757-1.png]] 28 + 29 +=== === 30 + 31 +you would type a URL like this: 32 + 33 + 34 +##precomputed:~/~/https:~/~/data-proxy.ebrains.eu/api/buckets/(% style="color: rgb(255, 255, 255); background-color: rgb(52, 152, 219)" %)quint-demo(%%)/(% style="color: rgb(255, 255, 255); background-color: rgb(155, 89, 182)" %)tg-ArcSwe_mice_precomputed/hbp-00138_122_381_423_s001.precomputed(%%)## 35 + 36 +this scheme is the same whether you're loading data into the Neuroglancer viewer or specifying an input URL in the export applet. 37 + 38 +=== Viewing 2D Data === 39 + 18 18 If your dataset is 2D like in the example, you can click the "switch to xy layout" button at the top-right corner of the top-left quadrant of the viewport to use asingle, 2D viewport: 19 19 20 20 [[image:image-20220125164416-3.png]]