Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 21.1
edited by sharoncy
on 2021/12/08 14:06
Change comment: There is no comment for this version
To version 19.1
edited by sharoncy
on 2021/12/08 14:03
Change comment: There is no comment for this version

Summary

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19 19  
20 20  The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the panel in the top left corner. Instructions for using the apps are also provided.
21 21  
22 -1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a reference atlas.
22 +1. **WebAlign: **enables registration of the 2D image series to a reference atlas.
23 23  1. **IlastikWeb:** enables extraction of objects such as cells.
24 -1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification per atlas-region.
24 +1. **NutilWeb: **enables quantification per atlas-region.
25 25  1. **Meshview: **enables visualisation of the Nutil coordinate output.
26 26  
27 27  The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files. The coordinates files can be viewed in Meshview. Files transfer between the apps is done through the Bucket.