Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 24.1
edited by sharoncy
on 2021/12/08 14:09
Change comment: There is no comment for this version
To version 28.1
edited by sharoncy
on 2021/12/09 10:54
Change comment: There is no comment for this version

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15 15  = What is QUINT? =
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18 -QUINT is a workflow for atlas-based quantification of objects such as cells in 2D histological images from mouse or rat brain.
18 +QUINT is a workflow for atlas-based quantification of objects such as cells in 2D histological images from mouse or rat brain. For more information see[[ here>>https://ebrains.eu/service/quint]].
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20 -The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the panel in the top left corner. Instructions for using the apps are also provided.
20 +The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (displayed on the left in desktop browsers and below on your mobile). Instructions for using the apps are also provided.
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22 22  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a reference atlas.
23 23  1. **IlastikWeb:** enables extraction of objects such as cells.
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24 24  1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification per atlas-region.
25 25  1. **Meshview: **enables visualisation of the Nutil coordinate output.
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27 -The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files. The coordinates files can be viewed in Meshview. File transfer between the apps is done through the Collab Bucket.
27 +The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
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30 30  = How to Install Collaboratory Apps =