Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 25.1
edited by sharoncy
on 2021/12/08 14:12
Change comment: There is no comment for this version
To version 30.1
edited by sharoncy
on 2021/12/09 14:24
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -15,9 +15,9 @@
15 15  = What is QUINT? =
16 16  
17 17  
18 -QUINT is a workflow for atlas-based quantification of objects such as cells in 2D histological images from mouse or rat brain. For more information see the EBRAINS [[QUINT service>>https://ebrains.eu/service/quint]] page.
18 +QUINT is an atlas-based workflow for quantification of cells and other features in 2D images of slices from mouse or rat brain. For more information see[[ here>>https://ebrains.eu/service/quint]].
19 19  
20 -The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the panel in the top left corner. Instructions for using the apps are also provided.
20 +The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (displayed on the left in desktop browsers and below on your mobile). Instructions for using the apps are also provided.
21 21  
22 22  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a reference atlas.
23 23  1. **IlastikWeb:** enables extraction of objects such as cells.
... ... @@ -24,7 +24,7 @@
24 24  1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification per atlas-region.
25 25  1. **Meshview: **enables visualisation of the Nutil coordinate output.
26 26  
27 -The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files. The coordinates files can be viewed in Meshview. File transfer between the apps is done through the Collab Bucket.
27 +The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
28 28  
29 29  
30 30  = How to Install Collaboratory Apps =