Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 35.1
edited by sharoncy
on 2022/01/26 18:16
Change comment: There is no comment for this version
To version 37.1
edited by sharoncy
on 2022/01/27 13:39
Change comment: There is no comment for this version

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26 26  
27 27  The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and Webilastik are fed into NutilWeb, which generates reports, plots, overlay images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
28 28  
29 +== Demo dataset ==
29 29  
31 +A demo dataset for use with the apps is provided in the Bucket: input and output files for all the tools are provided. The demo material originates from section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease that is available for download from the Human Brain Project Neuroinformatics Platform.
32 +
33 +Lillehaug, S., Syverstad, G., Nilsson, L., Bjaalie, J. G., Leergaard, T. B., & Torp, R. (2018). //Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice// [Data set]. Human Brain Project Neuroinformatics Platform: https:~/~/doi.org/10.25493/G6CQ-D4D
34 +
30 30  = How to Install Collaboratory Apps =
31 31  
32 32  * For the purpose of this demo, the relevant apps have already been installed.