Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 36.1
edited by sharoncy
on 2022/01/27 10:14
Change comment: There is no comment for this version
To version 33.1
edited by sharoncy
on 2022/01/11 20:54
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -20,17 +20,13 @@
20 20  The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
21 21  
22 22  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a reference atlas.
23 -1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells.
24 -1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
25 -1. **Meshview: **enables visualisation in 3D reference space.
23 +1. **IlastikWeb:** enables extraction of objects such as cells.
24 +1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification per atlas-region.
25 +1. **Meshview: **enables visualisation of the Nutil coordinate output.
26 26  
27 -The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and Webilastik are fed into NutilWeb, which generates reports, plots, overlay images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
27 +The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and IlastikWeb are fed into NutilWeb, which generates reports, images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
28 28  
29 29  
30 -== Demo dataset ==
31 -
32 -A demo dataset is provided in the Bucket. This may be used
33 -
34 34  = How to Install Collaboratory Apps =
35 35  
36 36  * For the purpose of this demo, the relevant apps have already been installed.