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Author

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1		-XWiki.sharoncy
	1	+XWiki.puchades

Content

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5	5	= QUINT demo =
6	6
7	7	This collab has been set up for demo of the online version of the QUINT workflow.
	8	+
	9	+The current integration level is basic and will improve during the remaining SGA3 period.
8	8	)))
9	9	)))
10	10
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12	12	(((
13	13	(% class="col-xs-12 col-sm-8" %)
14	14	(((
15		-= What is QUINT? =
	17	+== What is QUINT? ==
16	16
17		-
18	18	QUINT is an atlas-based workflow for quantification of cells and other features in 2-dimensional images of mouse or rat brain slices. For more information see[[ here>>https://ebrains.eu/service/quint]].
19	19
20	20	The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
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28	28
29	29	== Demo dataset ==
30	30
31		-A demo dataset for use with the apps is provided in the Bucket: input and output files for all the tools are provided. The demo material originates from section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease that is available for download from the Human Brain Project Neuroinformatics Platform.
	32	+A demo dataset for use with the apps is provided in the Bucket. The demo material originates from histological section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease.
32	32
33	33	Lillehaug, S., Syverstad, G., Nilsson, L., Bjaalie, J. G., Leergaard, T. B., & Torp, R. (2018). //Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice// [Data set]. Human Brain Project Neuroinformatics Platform: https:~/~/doi.org/10.25493/G6CQ-D4D
34	34
35		-= How to Install Collaboratory Apps =
	36	+== How to Install Collaboratory Apps ==
36	36
37	37	* For the purpose of this demo, the relevant apps have already been installed.
38	38	* Instructions for setting up the working environment, which includes installation of the Collaboratory Apps, are provided [[here>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/How%20to%20install%20Collaboratory%20Apps/]].
39	39
40		-= Who has access? =
	41	+== Who has access? ==
41	41
42	42	* Collaboratory app developers
43	43	* Reviewers