Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44

From version 37.1
edited by sharoncy
on 2022/01/27 13:39
Change comment: There is no comment for this version
To version 42.1
edited by puchades
on 2022/02/07 14:02
Change comment: There is no comment for this version

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1 -XWiki.sharoncy
1 +XWiki.puchades
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5 5  = QUINT demo =
6 6  
7 7  This collab has been set up for demo of the online version of the QUINT workflow.
8 +
9 +The current integration level is basic and will improve during the remaining SGA3 period.
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -= What is QUINT? =
17 +== What is QUINT? ==
16 16  
17 -
18 18  QUINT is an atlas-based workflow for quantification of cells and other features in 2-dimensional images of mouse or rat brain slices. For more information see[[ here>>https://ebrains.eu/service/quint]].
19 19  
20 20  The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
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28 28  
29 29  == Demo dataset ==
30 30  
31 -A demo dataset for use with the apps is provided in the Bucket: input and output files for all the tools are provided. The demo material originates from section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease that is available for download from the Human Brain Project Neuroinformatics Platform.
32 +A demo dataset for use with the apps is provided in the Bucket. The demo material originates from histological section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease.
32 32  
33 33  Lillehaug, S., Syverstad, G., Nilsson, L., Bjaalie, J. G., Leergaard, T. B., & Torp, R. (2018). //Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice// [Data set]. Human Brain Project Neuroinformatics Platform: https:~/~/doi.org/10.25493/G6CQ-D4D
34 34  
35 -= How to Install Collaboratory Apps =
36 +== How to Install Collaboratory Apps ==
36 36  
37 37  * For the purpose of this demo, the relevant apps have already been installed.
38 38  * Instructions for setting up the working environment, which includes installation of the Collaboratory Apps, are provided [[here>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/How%20to%20install%20Collaboratory%20Apps/]].
39 39  
40 -= Who has access? =
41 +== Who has access? ==
41 41  
42 42  * Collaboratory app developers
43 43  * Reviewers