Changes for page QUINT demo collab
Last modified by puchades on 2023/10/18 15:44
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... ... @@ -2,9 +2,9 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= MyCollab's ExtendedTitle=5 += QUINT demo = 6 6 7 - Mycollab's subtitle7 +This collab has been set up for demo of the QUINT workflow. 8 8 ))) 9 9 ))) 10 10 ... ... @@ -12,15 +12,30 @@ 12 12 ((( 13 13 (% class="col-xs-12 col-sm-8" %) 14 14 ((( 15 -= What can I findhere? =15 +== (% class="row" %)What is QUINT?(%%) == 16 16 17 -* Notice how the table of contents on the right 18 -* is automatically updated 19 -* to hold this page's headers 17 +QUINT is a workflow for atlas-based quantification of objects such as cells in 2D histological images from mouse or rat brain. 20 20 19 +The online version of QUINT uses several applications installed from the Collaboratory App Store. These have been pre-installed in this collab and are displayed in the panel in the top left corner. 20 + 21 +1. **WebAlign: **enables registration of the image series to a reference atlas. 22 +1. **IlastikWeb:** enables extraction of objects such as cells. 23 +1. **NutilWeb: **enables quantification per atlas-region. 24 +1. **Meshview: **a 3D atlas viewer that enables visualisation of the Nutil coordinate output. 25 + 26 +The apps may be used separately or in sequence. The output of WebAlign and IlastikWeb are fed into NutilWeb to generate reports, images and coordinate files. The coordinates files can be viewed in Meshview. 27 + 28 +== (% class="row" %)How to Install Collaboratory Apps(%%) == 29 + 30 +* For the purposes of this demo, the relevant apps have already been installed in the Collab. 31 +* For instructions on how to install Collaboratory Apps see... 32 + 21 21 = Who has access? = 22 22 23 -Describe the audience of this collab. 35 +* Collaboratory app developers 36 +* Reviewers 37 + 38 + 24 24 ))) 25 25 26 26