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Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 40.1
edited by sharoncy
on 2022/01/27 13:43
Change comment: There is no comment for this version
To version 43.1
edited by sharoncy
on 2022/02/08 10:04
Change comment: There is no comment for this version

Summary

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5 5  = QUINT demo =
6 6  
7 7  This collab has been set up for demo of the online version of the QUINT workflow.
8 +
9 +The current integration level is basic and will improve during the remaining SGA3 period.
8 8  )))
9 9  )))
10 10  
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21 21  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a reference atlas.
22 22  1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells.
23 23  1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
24 -1. **Meshview: **enables visualisation in 3D reference space.
26 +1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
25 25  
26 26  The apps may be used separately, or in sequence for full QUINT analysis. The output of WebAlign and Webilastik are fed into NutilWeb, which generates reports, plots, overlay images and coordinate files that can be downloaded from the Collab Bucket. The coordinates files may be viewed in Meshview. File transfer between the apps is done through the Bucket.
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