Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 42.1
edited by puchades
on 2022/02/07 14:02
Change comment: There is no comment for this version
To version 37.1
edited by sharoncy
on 2022/01/27 13:39
Change comment: There is no comment for this version

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5 5  = QUINT demo =
6 6  
7 7  This collab has been set up for demo of the online version of the QUINT workflow.
8 -
9 -The current integration level is basic and will improve during the remaining SGA3 period.
10 10  )))
11 11  )))
12 12  
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14 14  (((
15 15  (% class="col-xs-12 col-sm-8" %)
16 16  (((
17 -== What is QUINT? ==
15 += What is QUINT? =
18 18  
17 +
19 19  QUINT is an atlas-based workflow for quantification of cells and other features in 2-dimensional images of mouse or rat brain slices. For more information see[[ here>>https://ebrains.eu/service/quint]].
20 20  
21 21  The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
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29 29  
30 30  == Demo dataset ==
31 31  
32 -A demo dataset for use with the apps is provided in the Bucket. The demo material originates from histological section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease.
31 +A demo dataset for use with the apps is provided in the Bucket: input and output files for all the tools are provided. The demo material originates from section images from the transgenic Arctic / Swedish mouse model of Alzheimer's disease that is available for download from the Human Brain Project Neuroinformatics Platform.
33 33  
34 34  Lillehaug, S., Syverstad, G., Nilsson, L., Bjaalie, J. G., Leergaard, T. B., & Torp, R. (2018). //Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice// [Data set]. Human Brain Project Neuroinformatics Platform: https:~/~/doi.org/10.25493/G6CQ-D4D
35 35  
36 -== How to Install Collaboratory Apps ==
35 += How to Install Collaboratory Apps =
37 37  
38 38  * For the purpose of this demo, the relevant apps have already been installed.
39 39  * Instructions for setting up the working environment, which includes installation of the Collaboratory Apps, are provided [[here>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/How%20to%20install%20Collaboratory%20Apps/]].
40 40  
41 -== Who has access? ==
40 += Who has access? =
42 42  
43 43  * Collaboratory app developers
44 44  * Reviewers