Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 55.1
edited by sharoncy
on 2022/03/25 08:38
Change comment: Update collab owner property to sharoncy
To version 62.1
edited by puchades
on 2022/09/30 15:39
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -QUINT demo
1 +QUINT demo collab
Author
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1 -XWiki.sharoncy
1 +XWiki.puchades
Content
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 +
16 +
17 +{{box title="**Contents**"}}
18 +{{toc/}}
19 +{{/box}}
20 +
15 15  == What is QUINT? ==
16 16  
17 17  QUINT is an atlas-based workflow for quantification of cells and other features in 2-dimensional images of mouse or rat brain sections. For more information see[[ here>>https://ebrains.eu/service/quint]].
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20 20  
21 21  1. **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
22 22  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
29 +1. LocaliZoom enables a nonlinear refinement of the WebAlign registration.
23 23  1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
24 24  1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
25 25  1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
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41 41  
42 42  == Who has access? ==
43 43  
51 +* All collab users
44 44  * Collaboratory app developers
45 45  * Reviewers
46 46  
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47 47  
48 48  )))
49 49  
50 -
51 51  (% class="col-xs-12 col-sm-4" %)
52 52  (((
53 -{{box title="**Contents**"}}
54 -{{toc/}}
55 -{{/box}}
56 -
57 57  
58 58  )))
59 59  )))
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 -QUINT demo page for the report.
1 +QUINT demo page for setting up a working environemnt
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