Changes for page QUINT demo collab
Last modified by puchades on 2023/10/18 15:44
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... ... @@ -12,16 +12,8 @@ 12 12 ((( 13 13 (% class="col-xs-12 col-sm-8" %) 14 14 ((( 15 -(% class="box warningmessage" %) 16 -((( 17 -We have identified a bug when using the Safari web browser. Please use another one. 18 -))) 15 + 19 19 20 -(% class="box warningmessage" id="H" %) 21 -((( 22 -Users of other browsers may also encounter a warning message meant for Safari users. Should it happen, please empty the browser cache. 23 -))) 24 - 25 25 {{box title="**Contents**"}} 26 26 {{toc/}} 27 27 {{/box}} ... ... @@ -32,11 +32,12 @@ 32 32 33 33 The web version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided. 34 34 35 -1. **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT. 36 -1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas. 37 -1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series. 38 -1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region. 39 -1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space. 27 +* **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT. 28 +* **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas. 29 +* **[[LocaliZoom>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/How%20to%20perform%20a%20nonlinear%20registration%20with%20LocaliZoom/]]** enables a nonlinear refinement of the WebAlign registration. 30 +* [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series. 31 +* **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region. 32 +* [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space. 40 40 41 41 The apps may be used separately, or in sequence for full QUINT analysis. File transfer between the apps is done through the Bucket. 42 42 ... ... @@ -55,6 +55,7 @@ 55 55 56 56 == Who has access? == 57 57 51 +* All collab users 58 58 * Collaboratory app developers 59 59 * Reviewers 60 60 ... ... @@ -65,4 +65,6 @@ 65 65 ((( 66 66 67 67 ))) 62 + 63 +* 68 68 )))