Changes for page QUINT demo collab

Last modified by puchades on 2023/10/18 15:44
From version 62.1
edited by puchades
on 2022/09/30 15:39
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To version 50.1
edited by sharoncy
on 2022/02/11 08:52
Change comment: There is no comment for this version

Summary

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Title
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1 -QUINT demo collab
1 +QUINT demo
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1 -XWiki.puchades
1 +XWiki.sharoncy
Content
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4 4  (((
5 5  = QUINT demo =
6 6  
7 -This collab demonstrates a preliminary stage of integration of the QUINT workflow with the EBRAINS infrastructure. Following usability improvements and tighter integration of the workflow components, QUINT will be publicly released in Q3 2022.
7 +This collab has been set up for demo of the online version of the QUINT workflow.
8 +
9 +The current integration level is basic and will improve during the remaining SGA3 period.
8 8  )))
9 9  )))
10 10  
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12 12  (((
13 13  (% class="col-xs-12 col-sm-8" %)
14 14  (((
15 -
16 -
17 -{{box title="**Contents**"}}
18 -{{toc/}}
19 -{{/box}}
20 -
21 21  == What is QUINT? ==
22 22  
23 23  QUINT is an atlas-based workflow for quantification of cells and other features in 2-dimensional images of mouse or rat brain sections. For more information see[[ here>>https://ebrains.eu/service/quint]].
24 24  
25 -The web version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
21 +The online version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
26 26  
27 27  1. **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
28 28  1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
29 -1. LocaliZoom enables a nonlinear refinement of the WebAlign registration.
30 30  1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
31 31  1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
32 32  1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
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48 48  
49 49  == Who has access? ==
50 50  
51 -* All collab users
52 52  * Collaboratory app developers
53 53  * Reviewers
54 54  
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55 55  
56 56  )))
57 57  
52 +
58 58  (% class="col-xs-12 col-sm-4" %)
59 59  (((
55 +{{box title="**Contents**"}}
56 +{{toc/}}
57 +{{/box}}
58 +
60 60  
61 61  )))
62 62  )))
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 -QUINT demo page for setting up a working environemnt
1 +QUINT demo page for the report.
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1 +No
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