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3	3	(% class="container" %)
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5		-= QUINT demo =
	5	+= QUINT online demo =
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7		-This collab demonstrates a preliminary stage of integration of the QUINT workflow with the EBRAINS infrastructure. Following usability improvements and tighter integration of the workflow components, QUINT will be publicly released in Q3 2022.
	7	+This collab demonstrates a preliminary stage of integration of the QUINT workflow with the EBRAINS infrastructure.
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17		-{{box title="**Contents**"}}
	17	+{{box title="
	18	+
	19	+
	20	+
	21	+**Contents**"}}
18	18	{{toc/}}
19	19	{{/box}}
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25	25	The web version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
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27		-1. **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
28		-1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
29		-1. LocaliZoom enables a nonlinear refinement of the WebAlign registration.
30		-1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
31		-1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
32		-1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
	31	+* **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
	32	+* **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
	33	+* (% style="color:#16a085" %)**Webwarp**(%%) enables a nonlinear refinement of the WebAlign registration.
	34	+* [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
	35	+* **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
	36	+* [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
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34	34	The apps may be used separately, or in sequence for full QUINT analysis. File transfer between the apps is done through the Bucket.
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59	59	(((
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	66	+
	67	+* [[image:Collabs.quint.WebHome@QUINT_workflow_pic.png]]
62	62	)))