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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-= QUINT online demo =
	5	+= QUINT demo =
6	6
7		-This collab demonstrates a preliminary stage of integration of the QUINT workflow with the EBRAINS infrastructure.
	7	+This collab demonstrates a preliminary stage of integration of the QUINT workflow with the EBRAINS infrastructure. Following usability improvements and tighter integration of the workflow components, QUINT will be publicly released in Q3 2022.
8	8	)))
9	9	)))
10	10
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14	14	(((
15	15
16	16
17		-{{box title="
18		-
19		-
20		-**Contents**"}}
	17	+{{box title="**Contents**"}}
21	21	{{toc/}}
22	22	{{/box}}
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27	27
28	28	The web version of QUINT uses several applications installed from the EBRAINS Collaboratory App Store. These have been pre-installed in this collab and are displayed in the navigation panel (on the left-hand side in desktop browsers). Instructions for using the apps are also provided.
29	29
30		-* **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
31		-* **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
32		-* (% style="color:#16a085" %)**Webwarp**(%%) enables a nonlinear refinement of the WebAlign registration.
33		-* [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
34		-* **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
35		-* [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
	27	+1. **[[Image Service:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Image%20Service]]** convert your image series to formats compatible with QUINT.
	28	+1. **[[WebAlign:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/WebAlign]] **enables registration of the 2D image series to a 3D reference atlas.
	29	+1. [[**webilastik:**>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/webilastik]] enables extraction of objects such as cells from the image series.
	30	+1. **[[NutilWeb:>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/NutilWeb]] **enables quantification of the extracted objects per atlas-region.
	31	+1. [[**Meshview: **>>https://wiki.ebrains.eu/bin/view/Collabs/quint-demo/Meshview]]enables visualisation in 3D reference space.
36	36
37	37	The apps may be used separately, or in sequence for full QUINT analysis. File transfer between the apps is done through the Bucket.
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51	51
52	52	== Who has access? ==
53	53
54		-* All collab users
55	55	* Collaboratory app developers
56	56	* Reviewers
57	57
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62	62	(((
63	63
64	64	)))
65		-
66		-*
67	67	)))