Wiki source code of QUINT demo
Hide last authors
| author | version | line-number | content |
|---|---|---|---|
 |
1.1 | 1 | (% class="jumbotron" %) |
| 2 | ((( | ||
| 3 | (% class="container" %) | ||
| 4 | ((( | ||
| |
5.1 | 5 | = QUINT demo = |
| |
1.1 | 6 | |
| |
7.1 | 7 | This collab has the relevant Collaboratory Apps installed for QUINT demo for reporting purposes. |
| |
1.1 | 8 | ))) |
| 9 | ))) | ||
| 10 | |||
| 11 | (% class="row" %) | ||
| 12 | ((( | ||
| 13 | (% class="col-xs-12 col-sm-8" %) | ||
| 14 | ((( | ||
| |
9.1 | 15 | = What is QUINT? = |
| |
1.1 | 16 | |
| |
7.1 | 17 | QUINT is a workflow that uses several Collaboratory Apps for atlas-based quantification of objects such as cells in 2D histological image series from mouse or rat brain. |
| |
1.1 | 18 | |
| |
7.1 | 19 | * **WebAlign: **enables registration of the image series to a reference atlas. |
| 20 | * **Ilastik:** enables extraction of objects such as cells. | ||
| 21 | * **Nutil: **enables quantification per atlas-region. | ||
| 22 | * **Meshview: **enables visualisation of the Nutil coordinate output. | ||
| 23 | |||
| |
1.1 | 24 | = Who has access? = |
| 25 | |||
| |
7.1 | 26 | * Collaboratory app developers |
| 27 | * Reviewers | ||
| 28 | |||
| 29 | |||
| |
1.1 | 30 | ))) |
| 31 | |||
| 32 | |||
| 33 | (% class="col-xs-12 col-sm-4" %) | ||
| 34 | ((( | ||
| 35 | {{box title="**Contents**"}} | ||
| 36 | {{toc/}} | ||
| 37 | {{/box}} | ||
| 38 | |||
| 39 | |||
| 40 | ))) | ||
| 41 | ))) |