Last modified by puchades on 2021/12/07 10:37
From version 13.1
edited by sharoncy
on 2020/03/28 14:00
Change comment: There is no comment for this version
To version 12.1
edited by sharoncy
on 2020/03/28 13:58
Change comment: There is no comment for this version

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13 13  
14 14  === (% style="color:#c0392b" %)Naming convention(%%) ===
15 15  
16 -For QUINT analysis, Nutil Quantifier extracts objects from segmentations and registers them to areas defined in customised atlas maps. To match segmentations and corresponding atlas maps together, Nutil Quantifier relies on a unique ID in the file name of both files.The ID should be unique to the particular brain section and in the format: sXXX.., with XXX.. representing the section number. The section number should reflect the serial order and spacing of the sections (e.g. s002, s006, s010 for every 4^^th^^ section starting with section 2).
16 +For QUINT analysis, Nutil Quantifier extracts objects from segmentations and registers them to areas defined in customised atlas maps. To match segmentations and corresponding atlas maps together, Nutil Quantifier relies on a unique ID in the file name of both files.The ID is unique to a particular section and should be in the format: sXXX.., with XXX.. representing the section number. The section number should reflect the serial order and spacing of the sections (e.g. s002, s006, s010 for every 4^^th^^ section starting with section 2).
17 17  
18 18  Example: tg2345_MMSH_s001_segmentation.png
19 19  
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22 22  
23 23  === (% style="color:#c0392b" %)Running the transformation(%%) ===
24 24  
25 -Consult the Nutil user manual for detailed procedure (lincluded in the Nutil package available for download at Nitrc.org)
25 +Consult the Nutil user manual for detailed procedure (link to Manual on Nitrc.org)
26 26  
27 27  [[image:Figure_2_v3.jpg]]