Last modified by puchades on 2021/12/07 10:37
From version 19.1
edited by evanhancock
on 2020/07/21 09:40
Change comment: There is no comment for this version
To version 16.5
edited by puchades
on 2020/04/07 15:57
Change comment: There is no comment for this version

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1 -XWiki.evanhancock
1 +XWiki.puchades
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1 -**The //Transform// feature in the //Nutil// software **enables **image rotation, renaming, resizing and mirroring,** and is used to prepare image series for atlas alignment with QuickNII and segmentation with ilastik. It should be noted that QuickNII and ilastik have different input image size requirements. In addition, it is important that the input images follow the standard naming convention described below.
1 +**The //Transform// feature in the //Nutil// software **enables **image rotation, renaming, resizing and mirroring,** and is used to prepare image series for atlas alignment with QuickNII and segmentation with ilastik. It should be noted that QuickNII and ilastik have different input image size requirements. In addition, it is important that the input images follow the standard naming convention described below..
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3 3  >(% style="color:#27ae60" %)The //QuickNII// and //ilastik// software have different input image size requirements. It is also important that the input images follow the prescribed naming convention.
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19 19  
20 20  == (% style="color:#c0392b" %)Running the transformation(%%) ==
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22 -Consult the Nutil user manual for the detailed procedure (included in the Nutil package [[available for download here>>https://www.nitrc.org/projects/nutil/]])
22 +Consult the Nutil user manual for the detailed procedure (included in the Nutil package available for download at Nitrc.org)
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24 24  [[image:Figure_2_v3.jpg]]