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1		-XWiki.annedevismes
	1	+XWiki.puchades

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11	11	== (% style="color:#c0392b" %)Naming convention(%%) ==
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13		-For //QUINT //analysis, //Nutil //Quantifier quantifies objects extracted from segmentations and registers them to regions defined by customised atlas maps. To match segmentations and corresponding atlas maps together, //Nutil //Quantifier relies on a unique ID in the file name of both files. The ID should be unique to the particular brain section and in the format sXXX, with XXX representing the section number. The section number should reflect the serial order and spacing of the sections (e.g., s002, s006, s010 for every 4^^th^^ section starting with section 2).
	13	+For //QUINT //analysis, //Nutil Quantifier //quantifies objects extracted from segmentations and registers them to regions defined by customised atlas maps. To match segmentations and corresponding atlas maps together, //Nutil Quantifier //relies on a unique ID in the file name of both files. The ID should be unique to the particular brain section and in the format sXXX, with XXX representing the section number. The section number should reflect the serial order and spacing of the sections (e.g., s002, s006, s010 for every 4^^th^^ section starting with section 2).
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15	15	Example: tg2345_MMSH_s001_segmentation.png
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20	20	== (% style="color:#c0392b" %)Running the transformation(%%) ==
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22		-Consult the //Nutil //user manual for the detailed procedure (included in the //Nutil //package [[available for download here>>https://www.nitrc.org/projects/nutil/]]).
	22	+Consult the //Nutil //user online manual for the detailed procedure [[https:~~/~~/nutil.readthedocs.io/en/latest/>>url:https://nutil.readthedocs.io/en/latest/]]
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24	24	[[image:Figure_2_v3.jpg]]