Last modified by annedevismes on 2021/06/08 11:56
From version 2.5
edited by puchades
on 2020/03/25 16:50
Change comment: There is no comment for this version
To version 4.2
edited by puchades
on 2020/03/25 16:58
Change comment: There is no comment for this version

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1 -== Analysis approach for series of rodent brain section image ==
1 +== [[image:ilastik_logo.PNG||style="float:right"]]Analysis approach for series of rodent brain section image ==
2 2  
3 3  There are two main approaches for the analysis of rodent brain section images.
4 4  
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21 21  
22 22  -Export the probability maps in HDH5 format, and simple_segmentation images in .png format, with the default settings.
23 23  
24 +-Review our results.
25 +
24 24  === Object classification workflow ===
25 25  
26 26  There are three options on the ilastik start up page for running Object Classification.  Choose the //Object Classification with Raw Data and Pixel Prediction Maps as input//**.**
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32 32  -Train the classifier with two classes (labeling and artefacts)
33 33  
34 34  (% class="wikigeneratedid" id="H" %)
35 --In the **Object Information Export** applet, export “Object Predictions” in PNG format.  Do not change the default export location
37 +-In the **Object Information Export** applet, export “Object Predictions” in PNG format.  Do not change the default export location.
36 36  
37 -
38 -
39 +(% class="wikigeneratedid" %)
40 +-Review our results.
ilastik_logo.PNG
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1 +XWiki.puchades
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