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Version 2.3 by puchades on 2020/03/25 14:56

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puchades 1.3 1 == Analysis approach for series of rodent brain section image ==
sharoncy 1.1 2
puchades 1.3 3 There are two main approaches for the analysis of rodent brain section images.
sharoncy 1.1 4
puchades 1.3 5 1. Pixel classification only (with two or more classes)
6 1. Pixel classification with two classes (//immunoreactivity// and //background//), followed by object classification with two classes (//objects-of-interest// and //artefact//).
sharoncy 1.1 7
puchades 1.5 8 **Which approach is best for my dataset?**
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10 As a general rule, pixel classification is suitable for images in which there are clear differences in the colour, intensity and/ or texture of the feature-of-interest versus the background and other structures.  If there is non-specific labelling in the image that is very similar in appearance to the labelling-of-interest, object classification may allow the non-specific labelling to be filtered out based on object level features such as size and shape. The best approach is determined by trial and error.
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puchades 1.6 12 === Pixel classification workflow ===
puchades 1.5 13
puchades 2.1 14 For a quick introduction, watch: [[https:~~/~~/www.youtube.com/watch?v=5N0XYW9gRZY&feature=youtu.be>>url:https://www.youtube.com/watch?v=5N0XYW9gRZY&feature=youtu.be]]
sharoncy 1.1 15
puchades 2.2 16 === Object classification workflow ===
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puchades 2.1 19 ==== ====
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