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7	7	**//Quantifier//** locates and quantifies labelling identified by segmentation in rodent brain section images (mouse or rat). It requires the following input:
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10		-1. **Segmentations with the labelling displayed in one RGB colour **(Left panel)
	10	+1. **Segmentations with the labelling displayed in one RGB colour**
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12	12	**Requirement:**
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18	18	To generate the segmentations we recommend the //Pixel and// //Object Classification workflows// in the //ilastik// software (//ilastik.org//). However, any image analysis software may be used.
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20		-1. **Customised anatomical atlas maps **(Right panel)
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	21	+1. **Customised anatomical atlas maps**
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	23	+Generate the atlas maps in FLAT format with the //QuickNII //software
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23		-
24		-Generate the atlas maps in FLAT format with the //QuickNII //software ([[www.nitrc.org/projects/quicknii>>url:https://www.nitrc.org/projects/quicknii]])
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26		-
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27	27	1. **Anchored XML** file generated with the //QuickNII// software.
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30	30	1. **Reference atlas label file** (in LABEL format) corresponding to the relevant atlas. The following reference atlases are included in the //Nutil// package (in the “Labels” folder).
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