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  • Quantifier.PNG

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3	3	A detailed Nutil user manual is included when downloading the software.
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	5	+[[image:Quantifier.PNG]]
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5	5	**Basic steps:**
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7	7	**//Quantifier//** locates and quantifies labelling identified by segmentation in rodent brain section images (mouse or rat). It requires the following input:
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9	9	(% start="1" style="list-style-type:decimal" %)
10		-1. **Segmentations with the labelling displayed in one RGB colour**
	12	+1. **Segmentations with the labeling displayed in one RGB colour**
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12	12	**Requirement:**
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25	25	(% start="3" %)
26	26	1. **Anchored XML** file generated with the //QuickNII// software.
27		-1. **Reference atlas label file** (in LABEL format) corresponding to the relevant atlas. The following reference atlases are included in the //Nutil// package (in the “Labels” folder).
	29	+1. **Reference atlas label file** (in LABEL format) corresponding to the relevant atlas. The following reference atlases are included in the //Nutil// package (in the “Labels” folder).
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	31	+[[image:Illustration seg_flat_files.png||height="254" width="500"]]
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30		-
31	31
32		-
33	33
34		-(% class="wikigeneratedid" id="HH4Won27tAppearinToC" %)
35		-

Illustration seg_flat_files.png

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Quantifier.PNG

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