Changes for page 5. Quantification and spatial analysis with Nutil
Last modified by puchades on 2021/11/16 09:11
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... ... @@ -10,14 +10,13 @@ 10 10 11 11 It requires the following input: 12 12 13 -1. (% style="color:#c0392b" %)**Segmentations with the labelling displayed in a single RGB colour**13 +1. (% style="color:#c0392b" %)**Segmentations with the labelling displayed in one RGB colour** 14 14 15 15 **Requirement:** 16 16 17 -* 18 -** Input format: 24-bit RGB images in PNG 19 -** The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size). 20 -** //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red). 17 +* must be 24-bit RGB images in PNG format. 18 +* same proportions as the images used in QuickNII to generate the atlas maps (can be a different size). 19 +* //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red). 21 21 22 22 To generate the segmentations we recommend the //Pixel and// //Object Classification workflows// in the //ilastik// software (//ilastik.org//). However, any image analysis software may be used. 23 23