Last modified by puchades on 2021/11/16 09:11
From version 20.1
edited by puchades
on 2020/04/07 16:47
Change comment: There is no comment for this version
To version 18.1
edited by puchades
on 2020/03/30 17:14
Change comment: There is no comment for this version

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10 10  
11 11  It requires the following input:
12 12  
13 -1. (% style="color:#c0392b" %)**Segmentations with the labelling displayed in a single RGB colour**
13 +1. (% style="color:#c0392b" %)**Segmentations with the labelling displayed in one RGB colour**
14 14  
15 15  **Requirement:**
16 16  
17 -*
18 -** Input format: 24-bit RGB images in PNG
19 -** The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size).
20 -** //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red).
17 +* must be 24-bit RGB images in PNG format.
18 +* same proportions as the images used in QuickNII to generate the atlas maps (can be a different size).
19 +* //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red).
21 21  
22 22  To generate the segmentations we recommend the //Pixel and// //Object Classification workflows// in the //ilastik// software (//ilastik.org//). However, any image analysis software may be used.
23 23