Changes for page 5. Quantification and spatial analysis with Nutil

Last modified by puchades on 2021/11/16 09:11

From version 22.1

edited by puchades
on 2020/04/07 16:50

Change comment: Uploaded new attachment "Illustration seg_flat_files.png", version {1}

To version 20.1

edited by puchades
on 2020/04/07 16:47

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@@ -14,9 +14,10 @@
  **Requirement:**
--* Input format: 24-bit RGB images in PNG
--* The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size).
--* //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red).
++*
++** Input format: 24-bit RGB images in PNG
++** The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size).
++** //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red).
  To generate the segmentations we recommend the //Pixel and// //Object Classification workflows// in the //ilastik// software (//ilastik.org//). However, any image analysis software may be used.