Changes for page 5. Quantification and spatial analysis with Nutil
Last modified by puchades on 2021/11/16 09:11
Summary
-
Page properties (1 modified, 0 added, 0 removed)
-
Attachments (0 modified, 0 added, 1 removed)
Details
- Page properties
-
- Content
-
... ... @@ -15,7 +15,7 @@ 15 15 **Requirement:** 16 16 17 17 * Input format: 24-bit RGB images in PNG 18 -* The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size). 18 +** The images have to have the same aspect ratio as the images used in QuickNII to generate the atlas maps (can be a different size). 19 19 * //Quantifier** **//is only able to extract one RGB colour at a time. Apply one RBG colour to all of the objects of interest, and specify this colour co//d//e in the GUI (e.g. 255, 0, 0 for red). 20 20 21 21 To generate the segmentations we recommend the //Pixel and// //Object Classification workflows// in the //ilastik// software (//ilastik.org//). However, any image analysis software may be used. ... ... @@ -28,7 +28,7 @@ 28 28 (% start="3" %) 29 29 1. (% style="color:#c0392b" %)**Anchored XML**(%%) file generated with the //QuickNII// software. 30 30 31 -[[image:Illustration seg_flat_files.png]] 31 +[[image:Illustration seg_flat_files.png||height="254" width="500"]] 32 32 33 33 == (% style="color:#c0392b" %)Reference atlases in //Nutil Quantifier//(%%) == 34 34 ... ... @@ -37,4 +37,4 @@ 37 37 38 38 - Allen mouse brain Atlas (CCFv3, 2015 or 2017) 39 39 40 -- Waxholm Space Atlas of the Sprague Dawley ratbrainv2 or v3.40 +- Waxholm Space Atlas of the Sprague Dawley Rat v2 or v3.
- Illustration seg_flat_files.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.puchades - Size
-
... ... @@ -1,1 +1,0 @@ 1 -79.2 KB - Content