Changes for page 6. Output of the QUINT workflow
Last modified by puchades on 2022/02/18 13:42
Summary
-
Page properties (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Content
-
... ... @@ -7,27 +7,22 @@ 7 7 8 8 [[image:0209_71661877_resize_Simple Segmentation.png]] 9 9 10 -(% class="small" %)Customized atlas map with individual features representation 11 - 12 - 13 13 (% start="2" %) 14 14 1. (% style="color:#c0392b" %)**Reports in CSV format** 15 15 16 -* RefAtlasRegions: report with output organised based on all the regions in the reference atlas. 17 -* CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section. 18 -* Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. 13 +-RefAtlasRegions: report with output organised based on all the regions in the reference atlas. 19 19 15 +-CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section. 16 + 17 +-Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section. 18 + 20 20 [[image:Report_example.PNG]] 21 21 22 22 (% start="3" %) 23 23 1. (% style="color:#c0392b" %)**Coordinates in JSON format (for the whole series and per section)** 24 24 25 -* The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer. 26 - 27 27 == (% style="color:#c0392b" %)Visualise the QUINT output(%%) == 28 28 26 +The JSON files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link. 29 29 30 30 [[image:QUINTpoint cloud.png]] 31 - 32 - 33 -Point clouds visualised with MeshView.