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  • 0209_71661877_resize_Simple Segmentation.png
  • QUINTpoint cloud.png
  • Report_example.PNG

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1		-== **How to interpret the //Quantifier// output** ==
	1	+== (% style="color:#c0392b" %)How to interpret the //Nutil Quantifier// output(%%) ==
2	2
3		-[[image:Quantifier output.png]]
4	4
5		-1. **Images in PNG format**
	4	+1. (% style="color:#c0392b" %)**Images in PNG format**
6	6
7	7	Segmentations superimposed on the atlas maps. Object colours are assigned based on the sheet specified under “Report Regions”. If custom areas and colours are not specified, or object falls outside of the specified areas, the objects are shown in red by default.
8	8
9		-(% start="2" %)
10		-1. **Reports in CSV format**
	8	+[[image:0209_71661877_resize_Simple Segmentation.png]]
11	11
12		--RefAtlasRegions: report with output organised based on all the regions in the reference atlas.
	10	+(% class="small" %)Customized atlas map with individual features representation
13	13
14		--CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section.
15	15
16		--Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section.
	13	+(% start="2" %)
	14	+1. (% style="color:#c0392b" %)**Reports in CSV format**
17	17
	16	+* RefAtlasRegions: report with output organised based on all the regions in the reference atlas.
	17	+* CustomRegionsSummary and CustomRegionSections**: **reports with the output organised based on the custom regions defined in the template for the whole series (Summary) and for each individual section.
	18	+* Objects: list of all the objects in the whole series (Whole Brain), with sheets showing breakdown per section.
	19	+
	20	+[[image:Report_example.PNG]]
	21	+
18	18	(% start="3" %)
19		-1. **Coordinates in JSON format (for the whole series and per section)**
	23	+1. (% style="color:#c0392b" %)**Coordinates in JSON format (for the whole series and per section)**
20	20
21		-These files contains the point clouds that can be visualised with the MeshView atlas viewer, which is available at [[www.nitrc.org/projects/meshview>>url:https://www.nitrc.org/projects/meshview]] via the MediaWiki link.
	25	+* The JSON files contains point clouds coordinates in the selected reference atlas space that can be visualised with the MeshView atlas viewer.
	26	+
	27	+== (% style="color:#c0392b" %)Visualise the QUINT output(%%) ==
	28	+
	29	+
	30	+[[image:QUINTpoint cloud.png]]
	31	+
	32	+
	33	+Point clouds visualised with MeshView. Location of human amyloid in blue, mouse amyloid in red and pyroglutamate modified amyloid in green, in Hippocampal regions of transgenic Tg2573 mouse brain.

0209_71661877_resize_Simple Segmentation.png

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